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Hp 5890

Manufactured by Agilent Technologies
Sourced in United States, Germany

The HP 5890 is a gas chromatograph manufactured by Agilent Technologies. It is designed to separate and analyze complex mixtures of chemicals. The core function of the HP 5890 is to provide precise and reliable gas chromatography capabilities for a variety of research and industrial applications.

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38 protocols using hp 5890

1

Biogas Production and Microbial Growth Analysis

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At the end of each incubation time, the fermentation vessels were placed in an ice bath to measure the headspace gas pressure in each vessel using a digital readout voltmeter (Laurel Electronics, Inc., Costa Mesa, CA, USA). Gas samples for CH4 and CO2 analysis were transferred into a vacuum test tube (Vacutainer, Becton Dickinson, Franklin Lakes, NJ, USA) and analyzed by gas chromatography (Agilent Technologies HP 5890; Santa Clara, CA) using a TCD detector with a Column Carboxen 1006PLOT capillary column 30 m × 0.53 mm (Supelco), following the procedure described in Kim et al. [15 (link)]. A standard mixture of CH4 and CO2 (RIGAS, Daejeon, Korea) was used to determine the CH4 concentrations of samples. Vacuum tubes containing gas samples under refrigeration were warmed prior to gas analysis by allowing the tubes to equilibrate in a gas chromotograph (Agilent Technologies HP 5890; Santa Clara, CA, USA) for at least 30 min.
The amount of microbial growth rate was determined as optical density (OD) value at 550 nm with a spectrophotometer (Model 680, Bio-Rad Laboratories, Hercules, CA, USA). For measuring glucose, 200 μL of supernatant was mixed with 600 μL of DNS solution and incubated for 5 min in a boiling water bath. Glucose concentration was the OD at 595 nm, determined with a microplate reader (Model 680, Bio-Rad Laboratories, Irvine, CA, USA) [24 (link)].
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2

GC-MS Analysis of OS8P Chemical Components

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The chemical components of OS8P were analyzed using a gas chromatograph with mass spectrometry (GC-MS), following the modified method of Chit-aree et al. (19 (link)). Sample preparation involved mixing 0.1 mg of OS8P with 1 ml of anhydrous ether (Merck, Germany). GC-MS analysis was conducted using an Agilent HP 5890 gas chromatography instrument coupled with an Agilent MSD HP 5970 mass selective detector and HP 59970 MS Chemstation with a 59973 NBS mass spectral library (NBS_REVF). A fused silica column of 25 m × 0.20 mm × 0.25 µm film thickness (Varian Inc., Agilent Technologies, USA) was used for separation, and each extracted sample of 1 µl was injected in an injector operation. High-purity helium gas (99.999%) was used as a carrier gas at a 1.0 ml/min flow rate. The ion source and quadrupole mass analyzer were kept at 230 and 150°C, respectively, and the analysis was conducted for 60 min per sample. The MSD Chemstation software (Agilent Technologies) and commercial libraries (NIST02.L, NIST05.L, and Wiley7Nist05.L) were used to identify the chemical compounds of OS8P.
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3

VFA Analysis in Fermentation Samples

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In current study, VFAs include acetic acid (C2:0), propionic acid (C3:0), butyric acid (C4:0), isobutyric acid (isoC4:0), valeric acid (C5:0), and isovaleric acid (isoC5:0). Every 2 mL of incubation fluid from each fermentation bottle on a time scale t2 were centrifuged at 10,000 × g and 4°C for 15 min. 1.5 mL of supernatant solution was collected, which was immediately mixed and homogenized with 0.15 mL 25% metaphosphoric acid. The mixture solution was centrifuged again at 10,000 × g at 4°C for 15 min, and the supernatant solution was collected to determine each VFA content by gas chromatography (HP5890, Agilent 5890; Agilent Technologies Co. Ltd, USA). The DB-FFAP column (Agilent, No.: 122-3232, 30 m in length with a 0.25 mm i.d. and 0.25 um thickness) was used. The parameters of this column were set as the attenuation in a nitrogen split ratio of 1:50, hydrogen flow 30 mL/min, airflow 365 mL/min, injector temperature 250°C, column temperature 150°C and detector temperature 220°C with N2 as carrier gas at a flow rate of 0.8 mL/min. The relative response factor, represented as the peak of each VFA, was calculated against a standard VFA mixture analyzed following every 10 measurements.
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4

Ethylene Production Quantification Protocol

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Ethylene production was measured by enclosing a single whole plant, after having gently removed the substrate from the roots, in glass air‐tight containers (30 ml) with holed plastic screw caps provided with rubber septa. Gas samples (2 ml) were taken from the headspace of the containers after 1 h incubation at room temperature. The ETH concentration in the sample was measured by a gas chromatograph (HP5890; Agilent Technologies Italia SpA, Cernusco sul Naviglio MI, Italy) using a flame ionization detector (FID), a stainless steel column (150 × 0.4 cm I.d. packed with HaySep®; Agilent Technologies, Santa Clara, CA, USA), column and detector temperatures of 70°C and 350°C, respectively, and nitrogen carrier gas at a flow rate of 30 ml min−1. Quantification of ETH was achieved by external standard techniques according to Mensuali Sodi et al. (1992) Data represent the mean of five biological replicates and ETH was expressed as pl g−1 h−1 FW.
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5

Plasma Amino Acid Profiling in Mice

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Mice were fasted 6 hr (8 AM–2 PM), and blood was collected at ZT8 (2 PM). Blood was collected from the orbital sinus in Pasteur pipettes, allowed to clot at room temperature (RT) for 30 min, centrifuged, and kept at −20 °C until use. Amino acid concentrations were assessed by GC/MS (HP 5890; Agilent Technologies, Santa Clara, CA), using the internal standard technique, as previously reported [136 (link)]. Briefly, known amounts of internal standards (L-[15N]glycine, L-[15N]glutamate, L-[15N]glutamine, L-[1-13C, methyl-2H3]methionine, L-[3,3-2H2]cysteine, L-[15N]alanine, L-[1-13C]leucine, L-[1-13C]phenylalanine, L-[3,3-2H2]tyrosine, L-[15N]threonine, L-[15N]serine, and L-[15N]proline [Cambridge Isotope Laboratories]) were added to plasma samples. Amino acid concentrations were determined considering the following mass-to-charge ratios (m/z): 218/219 for glycine, 432/433 for glutamate, 431/432 for glutamine, 320/324 for methionine, 406/408 for cysteine, 158/159 for alanine, 302/303 for leucine, 336/337 for phenylalanine, 466/468 for tyrosine, 404/405 for threonine, 362/363 for serine, and 184/185 for proline.
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6

Comprehensive Fatty Acid Profiling of Diets and Tissues

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Fatty acid profiles of mouse diets and tail and colon tissues were analyzed by gas chromatography (GC), as described previously [18 (link),97 (link)]. Briefly, tissue or food samples were ground to powder under liquid nitrogen and subjected to total lipid extraction and fatty acid methylation by 14% boron trifluoride (BF3)-methanol reagent (Sigma-Aldrich) at 100 °C for 1 h. Fatty acid methyl esters were analyzed using a fully automated HP5890 gas chromatography system equipped with a flame-ionization detector (Agilent Technologies, Palo Alto, CA, USA). The fatty acid peaks were identified by comparing their relative retention times with the mixed commercial standards (NuChek Prep, Elysian, MN, USA), and the area percentage for all resolved peaks were analyzed by using a PerkinElmer M1 integrator. The fatty acids examined as total n-6 PUFA with GC include: Linoleic acid (C18:2n6), Gamma-linolenic acid (C18:3n6), Eicosadienoic acid (C20:2n6), Dihomo-gamma-linolenic acid (C20:3n6), Arachidonic acid (C20:4n6), Docosadienoic acid (C22:2n6), Adrenic acid (C22:4n6) and Docosapentaenoic acid (22:5n6). The fatty acids examined as total n-3 PUFA with GC include: α-Linolenic acid (C18:3n3), Eicosatrienoic acid (C20:3n3), Eicosapentaenoic acid (C20:5n3), Docosapentaenoic acid (C22:5n3), and Docosahexaenoic acid (C22:6n3).
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7

Alkane Quantification via GC-FID

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Alkane concentrations were measured injecting 100 μl of sample with a Hamilton glass syringe in a HP 5890 gas chromatograph (Agilent, United States) equipped with a Porapak Q column (1.8 m, ID 2 mm) and a flame ionization detector.
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8

Microalgal Lipid Extraction and FAME Analysis

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Microalgal cells were harvested by centrifugation at 5035×g for 10 min. (Supra-22K, Hanil Science Industrial, Republic of Korea). The pellets were washed twice with deionized water, lyophilized at − 80 °C for 3 days and then used for lipid extraction. For the lipid extraction, a chloroform–methanol mixture (2:1, v/v) was added to 10 mg of lyophilized cells and then vigorously mixed in a Teflon-sealed screw-capped Pyrex tube (Pyrex, USA) for 10 min. 0.5 mg of heptadecanoic acid (C17:0) were added as an internal standard for gas chromatography (GC). For transesterification which converts extracted lipid into fatty acid methyl esters (FAMEs), 1 mL of methanol and 300 μL of sulfuric acid were added and then incubated at 100 °C for 20 min. After cooling down, 0.3 N concentration of sodium hydroxide was added to rinse the remaining methanol and sulfuric acid. After centrifugation at 4000 rpm for 10 min at room temperature, the organic phase (lower layer) was filtered using a 20 μm RC-membrane syringe filter (Sartorius Stedim Biotech, Germany). FAMEs were analyzed by GC (HP5890, Agilent, USA) equipped with a flame ionized detector (FID) and an HP-INNOWAX polyethylene glycol column (30 m × 0.32 mm × 0.5 μm; H19091 N-213, Agilent, USA). The FAME composition and content were determined with a 37-component mix of FAME standards (F.A.M.E. Mix C8–C24, Supelco, USA).
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9

Quantitative Analysis of β-ionone

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Culture samples were centrifuged for 2 min at 6,000 rpm. The organic phase was dried over anhydrous sodium sulfate. Quantitation was performed by means of a gas chromatography system HP 5890 coupled to a flame ionization detector using a DB-FFAP capillary column (60 m × 0.25 mm id, 0.25 µm film thickness) (J&W Scientific, Agilent Technologies). Injection of the samples was performed in splitless mode at 250°C. The oven program started at 80°C for 1 min, then the temperature was raised up 10°C/min to 120°C and then 3°C/min until 240°C. Concentrations of β-ionone were calculated by using a calibration curve in the range of 0.1–50 mg/L using 4-isopropyl-3-methylphenol 4IP3MP as internal standard (Sigma-Aldrich, St. Luis, MO, USA). Additionally, mass spectra were obtained using a HP5890A gas chromatograph connected to a HP 5975 C mass spectrometer in electron impact (EI) mode at 70 eV.
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10

Synthesis and Characterization of Novel Compounds

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General comments: All reactions were carried out under air. Reactions were monitored by TLC analysis (pre-coated silica gel plates with fluorescent indicator UV254, 0.2 mm) and visualized with 254 nm UV light. Chemicals were purchased from Aldrich (Tianjin, China), Alfa-Aesar (Tianjin, China), TCI (Shanghai, China) and unless otherwise noted were used without further purification. All compounds were characterized by 1H-NMR and 13C-NMR spectroscopy and recorded on Bruker (Beijing, China) AV 300 and AV 400 spectrometers. Gas-chromatography-mass-analysis was performed using an Agilent HP-5890 with an Agilent HP-5973 Mass Selective Detector (EI) and an HP-5-capillary column using helium as a carrier gas.
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