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10 protocols using t akt

1

Signaling Pathway Inhibition Assay

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Chemical inhibitors were purchased from Calbiochem (LY294002, PD98059, SB203580), Sigma (SP600125), and SelleckBiochem (A66, TGX-221, CAL-101, AS-252424, Ruxolitinib). The doses used and specific targets for each inhibitor are summarized in Table 1. Recombinant proteins were purchased from Austral Biological (IGF-1) and R&D Systems (IL-1β, OSM, IL-6, sIL-6R). Antibodies were purchased from Cell Signaling Technology (p-Akt S473, T-Akt, p-ERK T202/Y204, T-ERK, p-JNK T183/Y185, T-JNK, p-p38 T180/Y182, T-p38), Santa Cruz Biotechnology (p-STAT3 Y705, T-STAT3), and Abcam (MMP-13, MMP-2).
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2

Investigating Cytokine-Induced Signaling Pathways

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Human recombinant IL-1β was obtained from Biovision (Milpitas, CA). Baicalin was provided by Sigma (St. Louis, MO). Inhibitors of extracellular signal-regulated kinase (ERK; U0126), p38 (SB203580), and c-Jun N-terminal kinase (JNK; SP600125) were purchased from Calbiochem (Billerica, MA). Inhibitors of Akt (LY294002) and NF-κB (BAY-117082) were provided by Sigma. Antibodies against phospho-ERK (p-ERK), total-ERK (t-ERK), p-p38, t-p38, p-JNK, t-JNK, p-Akt, t-Akt, p-p50, p50, p-p65, p65, p-IκBα, IκBα, fibronectin, α-smooth muscle actin (α-SMA), and β-actin were obtained from Santa Cruz Biotechnology (Santa Cruz, CA).
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3

Molecular Pathways of Glucocorticoid Signaling

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Dexamethasone (DEX, CAS Number: 50-02-2), Corticosterone 21-acetate (CORT, 98%; CAS Number: 1173-26-8), were purchased from Sigma-Aldrich (USA). Human recombinant NGF was obtained from Upstate Biotechnology (Lake Placid, NY, USA). Glucocorticoid receptor inhibitor RU-486 was purchased from Calbiochem (La Jolla, CA, USA). Specific antibodies towards p-FoxO3a, p-AKT, T-AKT, p-ERK1/2, T-ERK1/2, GAPDH and β-actin were obtained from Santa Cruz Biotechnology (Delaware Ave, Santa Cruz, USA). Specific antibody towards NPW was obtained from Biobyt (Wuhan, China). Antibody against FoxO3a was obtained from Cell Signaling Technology (Woburn, USA). Antibody against CRH was obtained from Signalway antibody (Pearland, Texas, USA). GFP-N1 and GFP-FoxO3a were kindly provided by Dr. Marten P. Smidt, University Medical Center, Utrecht, Holland. The primers of RPL-19, FoxO3a and NPW were obtained from Invitrogen Co. Ltd. (Guangzhou, China). FoxO3a-siRNA was purchased from GenPharma Co. Ltd. (Shanghai, China).
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4

Signaling Pathway Inhibition Assay

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Chemical inhibitors were purchased from Calbiochem (LY294002, PD98059, SB203580), Sigma (SP600125), and SelleckBiochem (A66, TGX-221, CAL-101, AS-252424, Ruxolitinib). The doses used and specific targets for each inhibitor are summarized in Table 1. Recombinant proteins were purchased from Austral Biological (IGF-1) and R&D Systems (IL-1β, OSM, IL-6, sIL-6R). Antibodies were purchased from Cell Signaling Technology (p-Akt S473, T-Akt, p-ERK T202/Y204, T-ERK, p-JNK T183/Y185, T-JNK, p-p38 T180/Y182, T-p38), Santa Cruz Biotechnology (p-STAT3 Y705, T-STAT3), and Abcam (MMP-13, MMP-2).
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5

Western Blotting Quantification Protocol

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Western blotting assays were performed by well-established protocols as in our previous studies.12 (link),19 (link) The total protein amount of samples was determined by the BCA protein kit. About 20 μg proteins were used for each well. Then, proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes (Immobilon-P; Millipore, MA). After incubation with the primary antibody T-Akt (Santa Cruz, Cat# sc-81434), p-Akt473 (CST, Cat# 4060S), T-S6 (CST, Cat# 2317S), p-S6 (CST, Cat# 4858S), IL-1β (CST, Cat# 12703S), IL-6 (CST, Cat# 12912T), TNF-α (CST, Cat# 11948S), and β-actin (ABclonal, Cat# AC026), followed by incubation with secondary antibody (BOSTER, Cat# BA1054). Chemiluminescence reagents (Proteintech, Cat# PK10001) were added to the membrane. The targeted protein bands were visualized on X-ray film. The total gray of the interested band was quantified by the Image J software.
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6

Western Blot Analysis of Cellular Proteins

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Cells were lysed using radioimmunoprecipitation assay (RIPA) buffer (Beyotime, Nanjing, P.R. China) according to the manufacturer’s instructions. The concentration of protein was measured using a bicinchoninic acid (BCA) assay kit (Beyotime) according to the manufacturer’s instructions. A total of 20 μg of protein was separated by 12% SDS-PAGE and then transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore, Billerica, MA, USA). The membranes were blocked with 5% nonfat milk for 1 h at room temperature and then were incubated with primary antibodies against EphB2, CDK2, cyclin E, Bcl2, Bax, MMP2 (matrix metalloproteinase 2), MMP9, p-AKT, t-AKT, and GAPDH (Santa Cruz Biotechnology, Santa Cruz, CA, USA) at 4°C overnight. After rinsing, the membranes were incubated with horseradish peroxidase (HRP)-conjugated goat anti-mouse IgG (Santa Cruz Biotechnology) at room temperature for 2 h. The blots were detected using an enhanced chemiluminescence (ECL) detection system (Amersham Biosciences Corp., Piscataway, NJ, USA) according to the manufacturer’s instructions. The results were analyzed using the ImageJ program (NIH, Bethesda, MD, USA). GAPDH was used as internal control.
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7

IGF1R Inhibition and Vascular Function

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Glucose and MK2206 were bought from Sigma-Aldrich (Sigma-Aldrich, Missouri, USA). Antibodiesagainst CD31 and decorin were bought from Boster (Boster, Wuhan, China), while antibodies against VEGF, p-AKT, T-AKT, p-c-JUN, T-c-jun and β-actin were purchased from Santa Cruz biotechnology (Santa Cruz, Texas, USA). Two antibodies against IGF1R were used. One was used for western blot and the other for neutralizing IGF1R. The former was a rabbit polyclonal antibody purchased from Boster that reacts with rat and human, as well as mouse, IGF1R. The latter antibody, used for neutralizing IGF1R, was purchased from Abcam (Abcam, Cambridge, UK) and blocks IGF1 by binding to its receptor. It is a mouse monoclonal antibody against the IGF1 receptor and mainly reacts with human IGF1R. The ECM gel was purchased from BD Bioscience (BD Bioscience, CA, USA). All other reagents were purchased from commercial suppliers unless otherwise indicated.
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8

Skeletal Muscle Protein Expression Analysis

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The cell or gastrocnemius muscle tissue was homogenized in a lysis buffer containing cOmplete™ protease inhibitor Cocktail (Roche Diagnostics, Indianapolis, IN, USA) and protease inhibitor (Sigma-Aldrich, St. Louis, MO, USA; Oakville, ON, Canada) and subsequently centrifuged. The BCA Protein Assay Kit (Bio-Rad, Hercules, CA, USA) was employed to determine the protein concentrations, ensuring an equal protein concentration across all experimental groups. The equivalent protein concentrations from each group were then subjected to SDS-PAGE. Following electrophoresis, the membranes were blocked with 5% skim milk and incubated with primary antibodies overnight. The primary antibodies utilized for Western blot analysis included IGF, p-AKT, t-AKT, p-mTOR, mTOR, p-PI3K, t-PI3K, MyoD, Myogenin, MuRF1, p-FOXO3a, FOXO3a, Sirt1, and PGC1α (Santa Cruz Biotechnology, Santa Cruz, CA, USA), as well as GAPDH and β-actin (Sigma-Aldrich, CA, USA) for use as a loading control. Subsequently, the membranes were incubated with the corresponding secondary antibodies to visualize the protein bands using an LAS3000 luminescent image analyzer (Fuji Film, Tokyo, Japan). β-actin served as the loading control, and Image J software (National Institute of Health, Bethesda, MD, USA) was employed for quantitative analysis.
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9

Western Blot Analysis of Corneal Proteins

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The corneal tissue was lysed in ice-cold RIPA buffer with protease inhibitors, and homogenized by ultrasound. Protein concentration was determined by BCA method. The same amounts of protein were subjected to SDS-PAGE electrophoresis, and transferred to PVDF. The membrane was blocked with 2% BSA for 1 h, and blotted with primary antibodies against p-VEGF2 (1:200; Santa Cruz, USA), t-VEGF2 (1:200; Santa Cruz, USA), STAT3 (1:200; Santa Cruz, USA), p-MAPK (1:200; Santa Cruz, USA), t-MAPK (1:200; Santa Cruz, USA), p-Akt (1:200; Santa Cruz, USA), t-Akt (1:200; Santa Cruz, USA), β-actin (1:10 000; Bio-Rad, Hercules, CA, USA), VEGF (1:200; Santa Cruz, USA) and PDGF (1:200; Santa Cruz, USA) overnight at 4 °C. After washing with TBST, horseradish peroxidase-labeled secondary antibody (1:5000; Dako, Shanghai, China) was added and incubated for 1 hour at room temperature. After washing with TBST and incubating with ECL reagent, film was used for signal development. ImageJ software was used to scan the gray value of each band, with β-actin as the reference control. Each experiment was repeated 3 times.
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10

Protein Expression Analysis of HRMECs

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HRMECs were counted and separated into three groups: a negative control; a high glucose damage model treated with safranal (10 μL, 80 g/mL); and a high glucose damage model treated with high glucose (10 μL, 25 mol/L). A Bio-Rad test kit was used to extract the cells’ total protein and evaluate the protein content (Bio-Rad, Hercules, CA, USA). Equal amounts of protein (30 μg) were resolved on polyacrylamide gels containing 12% Tris-HCl before being transferred to a PVDF blotting membrane (Millipore, Billerica, MA, USA). After blocking, specific antibodies against phosphate-extracellular regulated protein kinases (p-ERK), total-ERK (t-ERK), p-P38, t-P38, p-serine/threonine kinase (AKT), t-AKT (1:2000, Santa Cruz, CA, USA), E-cadherin, N-cadherin, Snail, Twist, Fibronectin(1:2000, Santa Cruz, CA, USA) and beta actin (1:2,000, Abcam, Cambridge, MA, USA), were treated with the membranes. The protein bands were detected by chemiluminescence after the blots had been carefully washed and treated with peroxidase-conjugated goat anti-rabbit or anti-mouse secondary antibodies (1:1,000, ZSGB-Bio, Beijing, China) (Pierce, Rockford, IL, USA). Three times the experiment was conducted (10 (link)).
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