The largest database of trusted experimental protocols

30 protocols using nipagin

1

Dietary Restriction in Drosophila Melanogaster

Check if the same lab product or an alternative is used in the 5 most similar protocols
The mass-bred population of D. melanogaster used in this study was founded by approximately 600 inseminated females caught in Odder (55°56′42.46″ N, 10°12′45.31″ E), Denmark, in October 2010. Flies were maintained at 20 °C and 50% RH at a 12:12 h light/dark cycle. Prior to the experiments, flies were reared on standard Leeds medium (also entitled control diet in the current study) composed of dry yeast (60 g L−1), sucrose (40 g L−1), oatmeal (30 g L−1), agar (16 g L−1), Nipagin (12 mL L−1) (Nipagin, Sigma-Aldrich, St. Louis, MO, USA), and acetic acid (1.2 mL L−1).
Four different nutritional diets were constructed. Apart from the control diet, we made diets with 50%, 25%, and 10% of the nutritional content of the control diet using the indigestible compound α-cellulose (Product no. 102550125, Sigma-Aldrich, Buchs, SG, Switzerland) (Table 1). The concentrations of agar, Nipagin, and acetic acid were the same in all four diet types.
+ Open protocol
+ Expand
2

Synthetic Foods for Drosophila Culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
SF contained per liter 8 g of agar, 18 g of brewer’s
yeast, 10 g of soybean, 22 g of molasses, 80 g of cornmeal, 80 g of
malt, 6.3 mL of propionic acid (Sigma-Aldrich), and 1.5 g of Nipagin
(Sigma-Aldrich). Minimal M0 food contained per liter 10 g of UltraPure
Agarose (Invitrogen), 100 g of yeast extract (Kerry), 100 g of glucose
(Merck), 1.5 mL of Nipagin (Sigma-Aldrich) in 10% in ethanol, and
1 g stigmasterol (Sigma). M1 food is M0 food supplemented with 0.5
g of β-carotene (Sigma). M2 food is M1 food supplemented with
an unsaturated TAG (TAG 66:18; Larodan), and M3 is M1 food supplemented
with equal amounts (27, 29, and 28 mg) of three saturated TAGs (TAG
42:0; TAG 48:0; TAG 54:0; all from Larodan, Sweden).
+ Open protocol
+ Expand
3

Drosophila Lipid-Defined Diet Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Wild type flies (cantonS) were cultured on standard food (Bloomington stock center, https://bdsc.indiana.edu) at 20 °C maintaining a 12 h day/night cycle. Eggs from flies kept on respective lipid defined diets were transferred onto fresh lipid defined food and cultivated at 20 °C. Lipid defined food was composed as follows: 1. YAF-Oil: Yeast autolysate (Sigma Aldrich, 100 g/l), Glucose (Roth, 100 g/l), Agar–Agar (Roth, 10 g/l), Nipagin (Sigma Aldrich, 1 g/l) and cold-pressed olive oil (grocery store, 10 g/l). 2. YAF-Sterol: Yeast autolysate (Sigma Aldrich, 110 g/l), Glucose (Roth, 110 g/l), Agar–Agar (Roth, 10 g/l), Nipagin (Sigma Aldrich, 1 g/l) and ß-Sitosterol (Sigma-Aldrich, 1 g/l). Both, YAF-Oil and YAF-Sterol, allow Drosophila to complete multiple regenerative cycles at 20 °C.
+ Open protocol
+ Expand
4

Long-term laboratory adapted Drosophila

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flies used in all experiments came from a long-term laboratory adapted population (the IV population) that was initiated from D. melanogaster collected in 1975 (Charlesworth and Charlesworth 1985 ). All flies were reared and maintained as adults in vials with standard 2% yeast food (water, agar, brewer's yeast, cornmeal, sucrose, and Nipagin [Sigma-Aldrich, Buchs, Switzerland]) on a 12L:12D cycle.
+ Open protocol
+ Expand
5

Drosophila Maintenance and Transgenesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The fly strains used in this study are listed in S3 Table. Flies were maintained on “Iberian” food [70 mg/ml yeast (Brewer’s yeast, MP Biomedicals, 903312), 55 mg/ml glucose (VWR, 10117HV), 7.7 mg/ml agar (SLS, FLY1020), 35 mg/ml organic plain white flour (Doves Farm, UK), 1.2 mg/ml Nipagin (Sigma, H3647), 0.4% propionic acid (Sigma-Aldrich, P5561] at 25°C and 60% humidity with a 12-hour light–12-hour dark cycle.
The transgenic fly lines generated in this study were obtained by phiC31-mediated transgenesis to integrate the relevant constructs into either the attP40 (25C6) or attP2 (68A4) landing sites following embryo injection.
+ Open protocol
+ Expand
6

Biochemical Assays for Enzymatic Activities

Check if the same lab product or an alternative is used in the 5 most similar protocols
Nipagin, agar, menadione, agarose, phenylmethylsulfonyl fluoride (PMSF), reduced glutathione (GSH), NADP+, NADPH, glucose-6-phosphate, ethylenediaminetetraacetic acid (EDTA), xylenol orange, cumene hydroperoxide, 2,4-dinitrophenylhydrazine (DNPH), N,N,N',N'-tetramethylethylenediamine (TEMED), quercetin, 1-chloro-2,4-dinitrobenzene (CDNB), Tris-HCl, and 5,5′-dithio-bis (2-nitro) benzoic acid (DTNB), were purchased from Sigma-Aldrich Chemie GmbH (Germany). Sucrose was purchased from TM Fluka. All other reagents were of the analytical grade from local suppliers (Ukraine).
+ Open protocol
+ Expand
7

Drosophila Populations for Genetics Research

Check if the same lab product or an alternative is used in the 5 most similar protocols
Experiments were performed on the wild-type D. melanogaster fruit flies originating from Australia, Canada, and Benin, and the OregonR strain (Bloomington Drosophila Stock Center).
The population from Australia had originally been sourced from Coffs Harbour and was collected in 2010 [33 (link)]. The population from Benin, Africa, was originally collected in 1970, is routinely used for Drosophila genetics research, and is called the Dahomey population [34 (link),35 (link)]. The population from Dundas, Canada, was originally collected in 2005 [36 (link)].
Flies were kept in the laboratory in 100 mL bottles at 20 °C, 25 °C, and 28 °C; the photoperiod was 12/12 h (day/night, respectively) with 60% relative humidity on standard fly medium consisting of brewer’s yeast (80 g/L), sucrose (50 g/L), agar (15 g/L), and Nipagin (Sigma–Aldrich) (8 mL/L). To generate the flies for the experiments, groups of 10 mated females were allowed to lay eggs in 100 mL rearing bottles during a restricted period of 6 h maximum under their common laboratory conditions. No CO2 anesthesia was used, as it affects metabolic traits [37 (link)].
+ Open protocol
+ Expand
8

Isogenic Drosophila melanogaster Wolbachia Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
DrosDel w1118isogenicD. melanogaster (iso) with wMelCS_b Wolbachia (Wolb+) and the matching control without Wolbachia (Wolb) were described elsewhere (19 (link), 27 (link), 68 (link)). Aljezur 1 and W-20 D. melanogaster lines (Wolb+ and Wolb) were also described previously (19 (link)). We determined that the Wolbachia variants in both of these lines lack an IS5 transposon insertion in gene WD1310, based on the primers described in Riegler et al. (69 (link)). This insertion is present in all wMelCS-like variants, but not in wMel variants (27 (link), 69 (link)), and therefore Aljezur-1 and W-20 are both wMel-like Wolbachia variants. Stocks were maintained at a constant temperature of 25°C on a diet consisting of: 45 g molasses, 75 g sugar, 70 g cornmeal, 20 g yeast extract, 10 g agar, 1,100 ml water, and 25 ml of 10% Nipagin, with the addition of live yeast (Sigma).
+ Open protocol
+ Expand
9

Drosophila Synthetic Diet Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Drosophila flies were raised on ‘standard’ lab diet (SF) or one of two synthetic diets (M0, M1). SF diet contained per liter: 8 g agar, 18 g brewer’s yeast, 10 g soybean, 22 g molasses, 80 g cornmeal, 80 g malt, 6.3 mL propionic acid, and 1.5 g nipagin. For both M0 and M1 diet, we dissolved 10 g of yeast extract (Kerry, Boston, MA, USA), 10 g of glucose (Merck, Branchburg, NJ, USA), and 1 g of UltraPure Agarose (Invitrogen, Waltham, MA, USA) in 100 mL of filtered tap water. The mixture was microwaved until it boiled and then cooled to 65–70 °C. Next, we added a solution of 0.1 g of stigmasterol (Sigma, St. Louis, MO, USA) in 2 mL of 95% ethanol and 1.5 mL of 10% nipagin (Sigma, St. Louis, MO, USA). In the case of M1 medium, we added a solution of 0.1 g beta-carotene (Sigma, St. Louis, MO, USA) in 2 mL of 95% ethanol. After thorough mixing for several minutes, the medium was poured into plastic vials (Genesee Scientific, El Cajon, CA, USA) and then allowed to solidify at room temperature.
+ Open protocol
+ Expand
10

Fly Maintenance and Genetic Strains

Check if the same lab product or an alternative is used in the 5 most similar protocols
All stocks were maintained at 25°C on a 12 hour light: 12 hour dark cycle on standard food containing 57 g/l cornmeal (Bedorf Mühle, Wachtberg-Villip, Germany), 11.5 g/l yeast (Gewürzmühle Brecht, Eggenstein-Leopoldshafen, Germany), 6 g/l agar-agar (Gewürzmühle Brecht), 7% sugar beet molasses (Grafschafter Krautfabrik, Meckenheim, Germany) and 1.4 g/l Nipagin (Sigma-Aldrich, St. Louis, MO). All experiments have been performed with female flies. RU inducible gal4 expressing lines were Tubulin-GeneSwitch (TubGS-gal4) [19 (link)] and Ti-GeneSwitch (TiGS2-gal4) [22 (link)]. For the overexpression of AMPs we used the following fly strains: UAS-Dro/CyO (UAS-Dro) and UAS-CecA1 (UAS-CecA1) [42 (link)]. The white strain used is white1118 from Bloomington stock center (line #5905).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!