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8 protocols using operetta high content system

1

Quantification of Ebolavirus Infection Rates

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For RNAi assays, at 60 h posttransfection, siRNA-transfected cells were infected with ERA-EGFP (multiplicity of infection [MOI] = 0.05) for 1 h at 37°C; for the overexpression assays, at 48 h posttransfection, the human TfR1-transfected CHO cells were infected with ERA-EGFP (MOI = 0.05) for 1 h at 37°C. The cells were then washed three times with 2% FBS-containing medium, and 2% FBS-containing medium was added. The supernatants were harvested at 24 and 48 h postinfection and titrated by serial dilution in BSR T7/5 cells. Viral titers are expressed as focus-forming units/mL.
To calculate the infection rate of ERA-EGFP, cells were fixed with 3% paraformaldehyde at 48 h postinfection, and the cell nuclei were stained with Hoechst 33342. The infection ratio was then determined by using the Perkin-Elmer Operetta high-content system.
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2

Evaluating mGluR2-GST Inhibition of Viral Infection

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The N-terminal GST-tagged soluble ectodomain of mGluR2 (mGluR2-GST, amino acids 19–567) was expressed and purified by FriendBio Technology (Wuhan, Hubei, China). HEK293 cells, SK cells, N2a cells, and mPN cells were seeded onto 96-well carrier plates. Viruses at different MOIs (ERA-eGFP at 0.05; VSV∆G-eGFP-ERAG and VSV-eGFP at 0.01) were mixed thoroughly with different concentrations of mGluR2-GST in 0.03 mL of cell culture medium at 4°C for 1 h before being used to infect the cells. The virus-protein mix was added to the cells and incubated at 37°C. At 48 h post-infection (16 h for VSV∆G-eGFP-ERAG and VSV-eGFP), the cells were fixed with 3% paraformaldehyde. Data were acquired by using the PerkinElmer Operetta high-content system and analyzed by using Columbus software. The relative infection ratio was calculated as described above.
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3

Immunostaining of Pluripotent Stem Cells

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hPSCs were cultured at 30,000 cells/cm2 in Matrigel-coated 96-well plates (Perkin Elmer CellCarrier) until reaching 60% confluent before fixing with 4% PFA. Fixed cells were perforated using 0.01% Triton X-100 and 0.05% Tween 20 [(diluted in phosphate-buffered saline (PBS)]. The cells were then incubated with mouse-anti human OCT4 (C-10 clone; No. sc-5279, 1:100; Santa Cruz Biotech) and subsequent secondary antibody using goat-anti mouse Alexa488 (No. A11001, 1:1000; Invitrogen) and counterstained with 0.5 μg/mL DAPI. Immunofluorescence images were captured using Operetta High-Content System (Perkin Elmer) and analyzed using Harmony High-Content Analysis Software.
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4

Macrophage Morphology Imaging Quantification

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The infected macrophages were fixed with a paraformaldehyde 4% in phosphate buffered saline during 20 min at room temperature, after 72 h of treatment. Cells were stained with Hoechst 33342 (Thermo Fischer Scientific, Waltham, MA, USA) at 16 µM. Images were acquired using the Operetta High-Content System in non-confocal mode and 20X air objective, for further segmentation and quantification (Perkin Elmer, Waltham, MA, USA). Pictures from five fields per well were analysed for reliable statistics.
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5

Investigating Viral Infection Inhibition

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HEK293 cells (4 × 104 cells/well), N2a cells (4 × 104 cells/well), or mPN cells (3 × 104 cells/well) were seeded onto 96-well plates. Cells were pretreated with FAC (Macklin, A800010) at the indicated concentrations for 1 h at 37°C. The cells were next infected with ERA-EGFP (MOI = 0.05) for 1 h at 37°C, thoroughly washed, and then cultured with 2% FBS-containing medium. FAC was present in the culture medium throughout the infection. At 48 h postinfection, the cells were fixed with 3% paraformaldehyde, and the cell nuclei were stained with Hoechst 33342. The infection ratio was then determined by using the Perkin-Elmer Operetta high-content system.
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6

Antibody Modulation of ERA-EGFP Infection in Cell Lines

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HEK293 cells (4 × 104 cells/well), N2a cells (4 × 104 cells/well), or mPN cells (3 × 104 cells/well) were seeded onto 96-well cell carrier plates (Perkin-Elmer, 6055302). The media were removed from the well, and the cells were treated with the indicated concentrations of TfR1 antibody (BD Pharmingen, 555534), or isotype antibody IgG2a (20 μg/mL; Southern Biotech, 0103-01) for 1 h on ice. Cells were then incubated with ERA-EGFP (MOI = 0.05) for 1 h at 4°C in the presence of the indicated concentrations of antibody. They were then washed and incubated with medium containing the indicated antibodies at 37°C. At 48 h postinfection, the cells were fixed with 3% paraformaldehyde, and the nuclei were stained with Hoechst 33342. The infection ratio was determined by using the Perkin-Elmer Operetta high-content system.
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7

Cardiac Differentiation of Human Pluripotent Stem Cells

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Undifferentiated hPSCs were seeded onto Matrigel-coated dishes at a density of 4 × 104 cells/cm2 and allowed to expand for 48 h (∼80% confluency). At this stage (d1 of differentiation), cultures were treated with medium comprising StemPro34 supplemented with (1:100 dilution) Matrigel and (1 ng/mL) BMP4 (R&D systems) and after 24 h (d2 of differentiation), medium comprising StemPro34 with (10 ng/mL) BMP4 and (8 ng/mL) Activin A (Life Technologies). Medium exchange was performed on d4 of differentiation using RPMI supplemented with 1xB27 (Life Technologies) and small molecule inhibitors, KY02111 (10 μM) and XAV939 (10 μM) (R&D systems). From d8 onward, cells were maintained in RPMI medium supplemented with B27 only, with medium changes every 3 days. Cardiac differentiation efficiency was accessed by using immunocytochemistry with primary mouse anti-human α-actinin antibody (No. A7811, 1:800; Sigma) dilution and secondary goat anti-rabbit Alexa633 (No. A21052, 1:400; Invitrogen), counterstaining with 0.5 μg/mL DAPI (No. D9542, 1:500; Sigma). Immunofluorescence images were captured using Operetta High-Content System (Perkin Elmer) and analyzed using Harmony High-Content Analysis Software.
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8

Virus-Protein Interaction in Cell Lines

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HEK293 cells (4 × 104 cells/well), N2a cells (4 × 104 cells/well), or mPN cells (3 × 104 cells/well) were seeded onto 96-well carrier plates. ERA-EGFP (MOI = 0.05) was mixed with the purified soluble TfR1-GST protein at the indicated concentrations or with GST at 4°C for 1 h. The media were removed from the well, and the cells were incubated with the virus-protein mixture at 37°C for 1 h. The cells were then washed and incubated with growth medium. At 48 h postinfection, the cells were fixed with 3% paraformaldehyde, and the nuclei were stained with Hoechst 33342. The infection ratio was determined by using the Perkin-Elmer Operetta high-content system.
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