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19 protocols using quetol 651

1

Ultrastructural Analysis of Ovaries in Myotis desjardinsi

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Ovaries of M. desjardinsi female adults were carefully dissected and excised with fine forceps under a stereo dissecting microscope. The ovaries were fixed in 2.5% glutaraldehyde (Nacalai Tesque, Kyoto, Japan) in 0.06 M phosphate buffer at 4°C for 2 h. After rinsing with the same buffer, the samples were postfixed with 2% osmium tetroxide at 4°C for 1 h and washed three times with 0.1 M sodium acetate for 10 min each. The samples were stained with 1% uranyl acetate for 20 min at room temperature and then sequentially dehydrated on ice twice with 70% ethanol for 5 min each and twice with 95% ethanol for 5 min each. The dehydrated samples were placed in Quetol 651 (Nisshin EM, Tokyo, Japan), a water-miscible resin, and embedded in a Quetol 651 resin mixture according to the manufacturer’s protocol. Ultrathin sections were stained with TI blue (Nisshin EM) and Sato’s lead solution, and observed under a JEM-1010 transmission electron microscope (JEOL, Tokyo, Japan).
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2

Ultrastructural Analysis of Plant Cells

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Petals at stage 3 were cut into pieces of about 1 mm3, fixed, dehydrated, and embedded in Quetol 651 (Nisshin EM Co., Tokyo, Japan) as described previously47 (link). Ultrathin sections were cut with a diamond knife on an ultramicrotome (Ultracut UCT, Leica Vienna, Austria) and the sections were mounted on copper grids, stained with uranyl acetate and lead citrate, and observed under a TEM (JEM-1400Plus; JEOL Ltd., Tokyo, Japan) at an acceleration voltage of 100 kV. Digital images were taken with a CCD camera (EM-14830RUBY2; JEOL).
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3

Ultrastructural Analysis of Yeast Cells

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Electron microscopy was performed by Tokai Electron Microscopy, Inc. (Nagoya, Japan) based on a rapid freezing and freeze-fixation method. Yeast cell pellets sandwiched between copper disks were quickly frozen in liquid propane at −175 °C and then treated with 2% glutaraldehyde, 1% tannic acid in ethanol, and 2% distilled water at -80 °C for 48 h. The samples were dehydrated using anhydrous ethanol, infiltrated with a 1:1 mixture of propylene oxide and resin (Quetol-651; Nisshin EM Co., Tokyo, Japan) at room temperature for 3 h, then infiltrated with 100% Quetol-651 at room temperature for 3 h, followed by polymerization at 60 °C for 48 h. The polymerized resins were ultra-thin-sectioned at a thickness of 70 nm using an ultramicrotome (Ultracut UCT; Leica). The sections were placed on copper grids, which were subjected to staining with 2% uranyl acetate for 15 min and with lead stain solution (Sigma-Aldrich) for 3 min. The samples were observed using a transmission electron microscope (JEM-1400 Plus; JEOL). Images were acquired using a charge-coupled device (CCD) camera (EM-14830RUBY2; JEOL).
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4

Transmission Electron Microscopy Imaging

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Tubes were cut into small pieces (~1 mm3), fixed, dehydrated, and embedded in Quetol 651 (Nisshin EM Co., Tokyo, Japan) as described by Ohmiya et al.46 (link). Ultrathin sections were cut with a diamond knife on an ultramicrotome (Ultracut UCT, Leica Microsystems, Wetzlar, Germany). Sections were picked up on copper grids, stained with uranyl acetate and lead citrate, and observed under a transmission electron microscope (JEM-1200EX; JEOL Ltd., Tokyo, Japan) at an acceleration voltage of 80 kV. Digital images were taken with a CCD camera (Veleta; Olympus Soft Imaging Solutions GmbH, Münster, Germany).
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5

Freeze-Substitution Microscopy Protocol

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Cells in the log phase were sandwiched between copper disks and frozen in liquid propane. The frozen cells were then freeze-substituted with acetone containing 2% glutaraldehyde and 2% tannic acid. After washing with acetone, samples were further fixed with 2% osmium tetroxide in acetone and dehydrated with ethanol. Samples were then infiltrated with propylene oxide twice and with a 70:30 mixture of propylene oxide and resin (Quetol-651; Nisshin EM, Tokyo, Japan), and the propylene oxide was volatilized. Samples were transferred to fresh 100% resin, and the resin was polymerized at 60 °C. Ultrathin sections (70 nm thick) of the blocks were prepared with an ultramicrotome (Ultracut UCT, Leica Microsystems, Wetzlar Germany). The sections were placed on copper grids, stained with lead stain solution (Sigma), and observed under a transmission electron microscope (JEM-1400Plus, JOEL, Tokyo, Japan).
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6

TEM Sample Preparation for Foraminifera

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Sample fixation, uranium staining, and subsequent resin embedding followed previously published protocols for TEM sample preparation (Nomaki et al. 2014, 2015b; Tsuchiya et al. 2015). In brief, fixed foraminiferal specimens (13 specimens from KS13‐T2, 2 specimens from KM16‐01) were embedded in 1% aqueous agarose and then cut into approximately 1 mm3 cubes. The specimens were decalcified with 0.2% EGTA in 0.81 mol/L aqueous sucrose solution (pH 7.0) for several days, rinsed with 0.22‐µm‐ filtrated artificial seawater (FASW) (REI‐SEA Marine II, Iwaki co., Ltd., Tokyo, Japan), and then postfixed with 2% osmium tetroxide in FASW for 2 h at 4 °C. Specimens were rinsed with an 8% aqueous sucrose solution and stained enbloc with 1% aqueous uranyl acetate for 2 h at room temperature. Stained specimens were rinsed with distilled water, dehydrated in a graded ethanol series, and embedded in epoxy resin (Quetol 651; Nisshin EM, Tokyo, Japan).
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7

Rapid Freezing and Ultrastructural Imaging

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Rapid freezing and freeze-substitution of washed cell pellets were carried out as described previously (Inokuma et al. 2020) (link). The substituted samples were transferred to -20 °C for 3 h and then warmed to 4 °C over 4 h. Next, they were dehydrated in ethanol 3 times at room temperature for 30 min each and continuously dehydrated with ethanol overnight. Infiltration was performed with propylene oxide (PO) and resin (Quetol-651; Nisshin EM Co., Tokyo Japan) at room temperature [100% PO for 30 min; 100% PO for 30 min; PO:resin 50:50 for 3 h; 100% resin overnight]. The resins were then polymerized at 60 °C for 48 h and cut into ultrathin sections of 70 nm thick using an ultramicrotome (Ultracut CUT; Leica, Vienna, Austria). The ultrathin sections were placed on copper grids, stained with 2% uranyl acetate for 15 min and lead stain solution (Sigma-Aldrich, St. Louis, MO, USA) for 3 min at room temperature. They were observed using a transmission electron microscope (JEM-1400Plus; JOEL Ltd., Tokyo Japan) at an acceleration voltage of 100 kV. Digital images (3296 × 2472 pixels) were taken with a CCD camera (EM-14830RUBY2; JOEL Ltd.).
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8

Transmission Electron Microscopy Sample Preparation

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The samples were prepared according to the protocol of Fung et al. 24 with several modifications. The cells were collected from 50 ml of LB medium (at OD 600 ~1) by centrifugation at 400 g for 10 min at RT, washed once with K-P buffer, and suspended in the same buffer. The cell suspension was then mixed with 2% (final concentration) of glutaraldehyde, and incubated at RT for 1.5 h. The cells were pelleted by centrifugation at 400 g for 10 min at RT, and then embedded in 2% agar. After the agar solidified, it was washed with K-P buffer and soaked in 1% osmium tetroxide in Veronal buffer for 1 h at RT. The agar blocks were then dehydrated by soaking in increasing concentrations of ethanol (60, 70, 80, 90 and 100% for 30 min each). The agar blocks were then soaked in propylene oxide for 30 min at RT. This step was repeated three times to completely replace the ethanol with propylene oxide. The blocks were then embedded in Quetol651 (Nisshin EM, Tokyo, Japan) and the samples were thin-sectioned (60 nm) using an ultramicrotome and a diamond knife. The samples were stained with Ti blue (Nisshin EM; diluted 10-fold) and 0.4% lead citrate. The samples were observed under a transmission electron microscope (H-7650 Hitachi, Tokyo, Japan) at an accelerating voltage of 100 kV.
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9

Tissue Embedding and Sectioning for Stented Arteries

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After fixation, the stented arteries were dehydrated through a graded acetone series of 70%, 80%, 90%, and 2 Â 100% for 60 min each. To make a resin mixture, 48.1 g of Quetol 651 (Nisshin EM, Tokyo, Japan), 55.4 g of methyl nadic anhydride (Nisshin EM), 13.5 g of nonenyl succinic anhydride (Heico Chemicals, PA), and 1.5 ml of dimethylaminomethyl phenol-30 (Nisshin EM) were gently stirred on a magnetic stirrer immediately before use. The stented arteries were immersed in acetone and Quetol 651 resin at the following ratios: (1) 3:1 (v/v) acetone: Quetol 651 resin for 20 min, (2) 1:1 (v/v) acetone: Quetol 651 resin for 20 min, and (3) 1:3 (v/v) acetone: Quetol 651 resin for 20 min. The stented arteries were infiltrated with Quetol 651 resin for 60 min followed by immersion in fresh Quetol 651 resin overnight. The stented arteries were also embedded in Quetol 651 resin for 60 min and transferred into a polypropylene tube (PP-10; Maruemu, Osaka, Japan). This tube was filled with a freshly prepared Quetol 651 resin, placed in a desiccator to exclude air, and then capped. Polymerization was carried out at 60 C in an electric oven. Following polymerization, the stented arteries were cut by a diamond band saw (V-19; Luxo, Aichi, Japan; Figure 1A-4).
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10

Microscopic Analysis of Aberrant Typhula Sclerotia

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The colors of basidiocarps and sclerotia were described according to the color identification chart of the Royal Botanic Garden Edinburgh (Flora of British Fungi) [36 ].
For light microscope sections, aberrant sclerotia of Typhula sp. were fixed with 2% glutaraldehyde (Nisshin EM, Co., Ltd., Tokyo, Japan) in 50 mM phosphate buffer and washed in the same buffer. The samples were then post-fixed with 1% osmium tetroxide (Nisshin EM, Co., Ltd., Tokyo, Japan), dehydrated with an ethanol series, and embedded in Quetol 651 (Nisshin EM, Co., Ltd., Tokyo, Japan). The sections (0.8 μm thick) were stained with toluidine blue (Wako Ltd., Osaka, Japan) and observed under a light microscope.
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