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48 protocols using deltavision elite system

1

Fluorescence Microscopy of GFP and mCherry

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For fluorescence microscopy, cells expressing GFP or mCherry proteins were visualized using a DeltaVision Elite system (GE), equipped with a Photometrics CoolSnap HQ2/sCMOS Camera, a 100× objective, and a Standard Filter Set (‘FITC’ for GFP fusion protein and ‘mCherry’ for mCherry fusion proteins). Image acquisition and deconvolution were performed using Softworx.
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2

Multimodal Imaging of Mitotic Dynamics

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Fluorescent cell lines were seeded into either 4-chamber, 35 mm glass bottom culture dishes (Greiner) or 4-well chamber slides (Ibidi) and maintained at 37°C in an environmental control station. Long-term time-lapse imaging was performed using a Deltavision Elite system (GE Healthcare) controlling a Scientific CMOS camera (pco.edge 5.5.). Images were acquired with an Olympus 40× 1.4 NA oil objective. Every 5 minutes, 7 × 3 μm z-sections were acquired in respective fluorescent channels and by DIC. Time-lapse imaging of PCM foci and EB1 or EB3 comets was performed using a Lecia SP-8 confocal microscope, equipped with a resonance scanner, and 405 nm, 488 nm, 552 nm and 638 nm laser lines. Images were acquired with a Leica 40× 1.3 NA or 63× 1.4 NA oil objectives. For time-lapse imaging of PCM foci, images were captured every 5 minutes in 20 × 1 μm z-sections. For time-lapse imaging of EB1 or EB3 comets, images were collected every 2 seconds in a single z-plane. Movies were deconvolved using the LIGHTNING adaptive approach and assembled and analysed in FIJI. Mitotic duration was calculated as the time taken from nuclear envelope breakdown to the onset of anaphase.
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3

Yeast Cell Fluorescence Imaging Protocol

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Yeast cells were grown to mid-log (JF646 was added to label Taf1-Halo), harvested and fixed using 4% formaldehyde (EMS) in PBS for 15 minutes at room temperature. Fixed cells were washed with PBS and spread between a coverslip and a standard glass slide. The edges of the imaging sample were sealed with clear nail polish.
Imaging was performed at room temperature on a DeltaVision Elite system (GE Healthcare) equipped with an Olympus 100 × 1.4 NA oil-immersion objective and a scientific complementary metal-oxide semiconductor camera (PCO). For each field of view, GFP and JF646 fluorescence image stacks were acquired sequentially at 0.2-μm intervals. Individual stacks were subjected to signal ratio enhancement and 20 cycles of iterative deconvolution. Projection images were generated by the Volume Viewer tool using SoftWoRx suite (GE Healthcare). The resulting images were colored and merged in ImageJ.
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4

Live-Cell Fluorescence Microscopy Imaging

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For fluorescence microscopy, cells expressing GFP, pHluorin, or mCherry proteins were visualized using a DeltaVision Elite system (GE), equipped with a Photometrics CoolSnap HQ2/sCMOS Camera, a 100× objective, and a DeltaVision Elite Standard Filter Set (“FITC” for GFP/pHluorin fusion protein and “mCherry” for mCherry fusion proteins). Image acquisition and deconvolution were performed using Softworx.
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5

Visualizing Plasmodium and Toxoplasma Proteins

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Fixed PfPanK2-GFP-expressing 3D7 strain P. falciparum parasites within infected erythrocytes were observed and imaged with a Leica TCS-SP2-UV confocal microscope (Leica Microsystems) using a 63× water immersion lens as described in the S1 Text. To confirm the expression of SaPanK-Ty1 in the TgPanK1-mAIDHA+SaPanK-Ty1 line, immunofluorescence assays were performed based on the protocol described by van Dooren et al. [73 (link)]. T. gondii parasites were incubated with mouse anti-Ty1 antibodies (1:200 dilution). Secondary antibodies used were goat anti-mouse AlexaFluor 488 at a 1:250 dilution. The nucleus was stained with DAPI. Immunofluorescence images were acquired on a DeltaVision Elite system (GE Healthcare) using an inverted Olympus IX71 microscope with a 100× UPlanSApo oil immersion lens (Olympus) paired with a Photometrics CoolSNAP HQ2 camera. Images taken on the DeltaVision setup were deconvolved using SoftWoRx Suite 2.0 software. Images were adjusted linearly for contrast and brightness.
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6

Time-Lapse Imaging of DNA Dynamics

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Cells were seeded onto an Ibidi dish (Ibidi) the day before acquisition. Medium were changed to Leibovitz’s L15 medium (Life Technologies) supplemented with 10% FBS and SiR‐DNA (100 nM, Spirochrome) prior to filming. Live cell imaging was performed on a Deltavision Elite system using a 40× oil objective (GE Healthcare). Images (DIC and Cy5 channels) were acquired every 5 min for 18 h. Three z‐stacks of 5 μm were imaged. SoftWork software (GEHealthcare) was used for data analysis.
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7

Dvl2 Localization in MDA-MB-231 Cells

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MDA-MB-231 cells were seeded on coverslips at 50% confluency. At 24 hours after seeding, cells were transfected with FLAG-Dvl2 using LipoJet Transfection Reagent (Signagen). 72 hours after seeding cells were fixed and permeabilized using 4% paraformaldehyde (PFA) and immunofluorescence block buffer (PBS + 0.1% Triton-x + 10% FBS). Cells were then labeled with primary antibodies for 1 hour followed by a 1 hour incubation with Alexa Fluor conjugated secondary antibodies. Coverslips were mounted on slides using ProLong AntiFade mountant (Thermo). Microscopy images were acquired using a DeltaVision Elite system (GE Healthcare) and processed using SoftWoRx software (GE Healthcare, Chicago, IL).
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8

Visualizing Actin Dynamics in Dictyostelium

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To study actin dynamics in the inner territory (Figure 1B), we used the photoconvertible fluorescent protein Eos as a tag (Wiedenmann et al., 2004 (link)). For the generation of a pDEX-DdEos expression vector, the sequence of monomeric Eos (Wiedenmann et al., 2004 (link)) was adapted to the codon usage of D. discoideum and cloned into pDEX (bsr), enabling expression under control of an actin-15 promoter (Müller-Taubenberger, 2006 ). The full-length coding sequence of act16 (DDB_G0272248), one of 17 identical actin proteins encoded in D. discoideum, was cloned in frame into the EcoRI site of the pDEX-DdEos vector. The sequences of DdEos and actin 16 were separated by a linker sequence, GSGTAGPGSTGSGTEF. DdEos-­actin cells were cultivated in the presence of 10 µg/ml Blasticidin S.
For photoconversion, a 405-nm diode laser, 100 mW, was used on the GE DeltaVision Elite system. The laser was focused onto the actin cortex of the substrate-attached cell surface and a flash with an exposure time of 80 or 250 ms was applied. The cells were imaged in the TIRF mode using 488/525 nm for excitation/emission of the green version of Eos, and 568/584 nm of the photoconverted red version. Local fluorescence intensities were measured with point-scans of 36 × 36 pixels using a plug-in of Fiji-ImageJ.
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9

Monitoring Stress Granule Formation

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GFP-ki-G3BP1 WT and shPARP10 cells were seeded in 2-well chambered cover glass (Nunc Lab-Tek) at around 70% confluency. One hour before imaging, cells were pre-incubated with CO2-independent medium containing 20% FBS. Cells were incubated with 0.2 mM arsenite and live-cell imaging was performed simultaneously for WT and shPARP10 cell lines. A total of 15–20 random fields were chosen and imaged, and the presence of SG was monitored as microscopically visible condensates in the FITC channel. Images were acquired at 5-min intervals for 90 min, controlled by the SoftWorx suite (GE Healthcare). Cells were imaged using a DeltaVision Elite system (GE Healthcare) microscope equipped with ×40 (1.516 N.A. oil) immersion objectives, a high-speed CCD Camera (Cool SNAP HQ2), appropriate filter sets for FITC, and an incubation chamber (37 °C and 80% humidity).
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10

High-Resolution Microscopic Imaging of Chromosomes

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Images of meiotic chromosomes were acquired with a Delta Vision ELITE system (GE) operated by the SoftWorx software using an Olympus IX71 microscope. To enhance the quality of images, about 10 serial optical sections were captured with 200-nm intervals and were subjected to deconvolution with default settings by SoftWorx. The best two sectioning images with the most signal–noise ratio were projected. Finally, only brightness-contrast adjustment was performed in Photoshop.
Images of somatic nuclei and metaphase chromosomes were acquired with FISHView 7.2.7 SP7 (Applied Spectral Imaging) using an Olympus BX61 microscope fitted with a cooled CCD camera (Cool-1300QS; VDS). One or more layers of the color images were adjusted using the curves and/or brightness-contrast functions of Photoshop CC 2015. Grayscale images were generated by converting the original, unadjusted red (probe) channel first to grayscale and then digitally increasing the signal strength to check for areas of nonspecific binding. For images in SI Appendix, Fig. S2, the conversion to grayscale was performed with FISHView, and then the brightest pixel was set to white using the levels eyedropper in Photoshop. For images in SI Appendix, Fig. S4, conversion was performed in Photoshop, and a pixel with a K (black) value of 70% was set to white.
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