The largest database of trusted experimental protocols

22 protocols using allegra x 12r centrifuge

1

Quantification of Cell Apoptosis by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell apoptosis was evaluated by flow cytometry using an Annexin V-FITC Apoptosis Detection Kit (KeyGen Biotech Co. Roche, Nanjing, China). Briefly, cells were seeded into 24-well plates at 1 × 105 cells per well and cultured for 48 h. Then the cells were detached by trypsinization, washed twice in PBS (2000 rpm, 5 min; Allegra X-12R centrifuge; Beckman Coulter, USA), and resuspended in 500 μL binding buffer. A volume of 5 μL Annexin V-FITC and 5 μL propidium iodide was added and mixed gently, and the cells were stained in the dark for 10 min at room temperature. The cells were analyzed immediately by flow cytometry (BD FACSCalibur, BD Bioscience, San Diego, CA, USA) and analyzed using Flowjo software (FlowJo, Ashland, OR, USA). The experiment was repeated three times.
+ Open protocol
+ Expand
2

Urine Biomarker Analysis in Kidney Transplant

Check if the same lab product or an alternative is used in the 5 most similar protocols
Urine of kidney transplant recipients was obtained from a Foley catheter, urine of non-transplant patients was acquired either by Foley catheter or spontaneous urination. The urine was centrifuged at 3000 rpm for 5 minutes in an Allegra® X-12R Centrifuge (Beckman Coulter®). For NephroCheck® measurement, 100 μl precleared urine together with 100 μl NephroCheck® buffer were mixed in the NephroCheck® conjugate vial, as described in the test manual. The loaded NephroCheck® cartridge was inserted into the NephroCheck® test meter Astute140®, and after 20 minutes the numeric value of AKI risk score (AKRS), resulting from the calculated product [IGFBP7]x[TIMP-2] in (ng/ml)2/1000 (referred to as NC-score), was recorded. At the same time the same patients’ urinary sediment was lysed in Trizol media and frozen at -20°C for subsequent RNA extraction. In addition an aliquot of cell suspension was used for cytospin preparation.
+ Open protocol
+ Expand
3

Extraction and Analysis of Bioactive Plant Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Aerial parts of three plant species, namely B. lanuginose, H. cymosum, and S. crenata, were collected and identified from two neighboring sites within the Western Cape Province, namely the University of the Western Cape Reserve and the Cape Peninsula University of Technology campus in Bellville. After allowing the plant leaves to dry, they were ground up and extracted with water (50 mL of distilled water added to 5 g of each plant powder) at 70 °C for 15 min. The extracts were filtered and then centrifuged at 3750 rpm for two hours using the Allegra® X-12R centrifuge (Beckman Coulter, Cape Town, South Africa). Each extract’s supernatant was then filtered via 0.45 m filters. The extracts were then freeze-dried with a FreeZone 2.5 L freeze dryer after being maintained overnight (~12 h) at −80 °C (Labconco, Kansas City, MO, USA) [17 (link)].
+ Open protocol
+ Expand
4

Retroviral Transduction of Murine Fetal Liver Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Transfections of HEK293T cells were conducted by combining 2.5 μg of MSCV-IRES-GFP or MSCV-RUNX1-ETO9a-IRES-GFP retroviral expression vector, 2.5 μg of MSCV-IRES-tdTomato or MSCV-Rassf2-IRES-tdTomato, along with packaging components. For transduction, primary E16.5–E18.5 murine fetal liver cells were resuspended in supplemented retroviral supernatant at densities of 2–3 × 106 cells/ml and centrifuged (2000 × g) in six-well plates at 32 °C for 3 h (Allegra X-12R centrifuge, Beckman Coulter), followed by overnight culture at 37 °C. Two consecutive retroviral transductions were performed in this manner on subsequent days. Transduction efficiencies were measured (GFP+ and tdTomato+ frequencies) by flow cytometry. Transduced cell populations were flow sorted and then pooled with untransduced “helper” fetal liver cells at a ratio of 1:6. For the primary leukemia model, 150,000 total cells per mouse were then transplanted into lethally irradiated (9.5 Gy) recipients and leukemia was monitored. Recipients were randomly allocated to experimental groups with equal distribution based on sex. Recipient mice found to develop GFP-negative/non-myeloid malignancies were excluded from analysis. Investigators were not blinded during group allocation or assessment of experimental outcomes.
+ Open protocol
+ Expand
5

Analytical Characterization of Organic Extracts

Check if the same lab product or an alternative is used in the 5 most similar protocols
All the chemicals and solvents (Sigma-Aldrich, Milan, Italy) were of analytical reagent grade and were used without any further purification. For the centrifugation of in-house cultured organisms, we used an Allegra X-12R centrifuge (Beckman Coulter, Milan, Italy).
The solid phase extraction was carried out using both prepacked and non-polystyrene–divinylbenzene columns (CHROMABOND® HR-X, Macherey-Nagel, Düren, Germany). Automated fractionations were carried out on the GX-271 ASPEC Gilson apparatus equipped with TRILUTION® LH Software (version No. 3.0, Gilson, Middleton, WI, USA). Silica gel chromatography was performed using precoated Merck F254 plates.
1H NMR spectra were recorded on a Bruker DRX 600 spectrometer equipped with an inverse TCI CryoProbe or 400 equipped with a CryoProbe Prodigy. Extracts were dissolved in 700 µL CDCl3/CD3OD 1:1 (v/v) and transferred to the 5 mm NMR tube. Chemical shift was referred to CHD2OD signal at δ 3.34.
+ Open protocol
+ Expand
6

Apoptosis Evaluation by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell apoptosis was evaluated by flow cytometry using an Annexin V‐FITC Apoptosis Detection Kit (KeyGen Biotech Co. Roche, Nanjing, China). Briefly, cells were seeded into 24‐well plates at 1 × 105 cells per well and cultured for 48 hours. Then, the cells were detached by trypsinization, washed twice in PBS (400 g, 5 minutes; Allegra X‐12R centrifuge; Beckman Coulter, USA) and resuspended in 500 μL binding buffer. A volume of 5 μL Annexin V‐FITC and 5 μL propidium iodide was added and mixed gently, and the cells were stained in the dark for 10 minutes at room temperature. The cells were analysed immediately by flow cytometry (BD FACSCalibur, BD Bioscience, San Diego, CA, USA) and analysed using Flowjo software (FlowJo, Ashland, OR, USA). The experiment was repeated three times.
+ Open protocol
+ Expand
7

Trichoderma Spore Isolation and Germination

Check if the same lab product or an alternative is used in the 5 most similar protocols
T22 and BOL-12 were maintained on potato dextrose agar (BD-Difco, Detroit, USA) at 25°C. To isolate conidiospore suspensions, one ml of sterile water was added to two-week-old Trichoderma cultures on potato dextrose agar and collected spores were filtered through a sterile piece of cotton wool. The spores were washed twice with sterile H2O (Milli-Q, Merck Millipore, Burlington, MA, USA) and pelleted at 3700g for 5 min at 4 °C in an Allegra X-12R centrifuge (Beckman, Brea, CA, USA). Spores were resuspended in sterile H2O and kept at 4°C until experiments.
Germination of T22 and BOL-12 spores for C. quinoa treatment was performed as described by Yedidia, Benhamou (Yedidia et al., 1999 (link)) using 15 ml tubes shaken at 200 rpm for 18 h. The germinated spore suspension was washed twice by centrifugation as described above and finally resuspended in sterile H2O. The final spore concentration was adjusted to be 1 germinated spore/μl and verified by colony forming unit (CFU) counts in potato dextrose agar Petri dishes.
+ Open protocol
+ Expand
8

Live-cell imaging of Bacillus subtilis

Check if the same lab product or an alternative is used in the 5 most similar protocols
For snapshot live-cell imaging, cells were mounted on microscope slides covered with a thin film of 1 % agarose in water, or NB/MSM for L-forms. Images were acquired with a Sony Cool-Snap HQ2 cooled CCD camera (Roper Scientific) attached to a Zeiss Axiovert 200M, or a Rolera EM-C2 (Q-imaging) camera attached to a Nikon TiE microscope, and analysed using Metamorph (Molecular Devices). For time lapse imaging, 300 μL of exponentially growing B. subtilis walled cells in NB/glucose or succinate media were placed on 35 mm sterile glass bottom microwell dishes (ibidi GmbH, Munich, Germany), which were pre-coated with 2 mg/ml bovine serum albumin (BSA), and incubated for 5 min. The dishes were centrifuged at 100 g for 2 min using a Beckman Allegra X-12R centrifuge. Non-adherent cells were removed, and a thin layer of NB/g with 0.2% agar bacteriological (Oxoid), 100 μg/ml PenG and lysozyme was placed on the top of the dishes. The dishes were placed on the microscope stage at 30°C. Images were acquired with a Sony Cool-Snap HQ2 cooled CCD camera (Roper Scientific) attached to a Zeiss Axiovert 200M, and analyzed using Metamorph (Molecular Devices). Pictures and videos were prepared for publication using ImageJ (https://imagej.nih.gov/ij) and Adobe Photoshop.
+ Open protocol
+ Expand
9

Extraction of Aqueous G. africana

Check if the same lab product or an alternative is used in the 5 most similar protocols
G. africana was collected during the month of May 2015 from the Western Cape Province, South Africa. The plant was identified by Dr. Chris N. Cupido, the co-author of this paper, and a specimen was deposited in Kirstenbosch National Botanical Garden (Cape Town, South Africa) under accession number 1468255/NBG. The fresh aerial parts of G. africana were dried in the shade. To obtain the aqueous extract, 50.0 mL of boiled distilled water were added to 5.0 g of the dried plant powder. Afterwards, the plant decoction was centrifuged for 2 h at 3750 rpm using an Allegra® X-12R centrifuge (Beckman Coulter, Cape Town, South Africa). The supernatant was then filtered through 0.45 μm filters and freeze-dried using FreeZone 2.5 L freeze-dryer (Labconco, Kansas City, MO, USA).
+ Open protocol
+ Expand
10

Apoptosis Evaluation by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell apoptosis was evaluated by flow cytometry using an Annexin V-FITC Apoptosis Detection Kit (KeyGen Biotech Co. Roche, Nanjing, China). Briefly, cells were seeded into 24-well plates at 1 × 105 cells per well and cultured for 48 h. Then the cells were detached by trypsinization, washed twice in PBS (2000 r.p.m., 5 min; Allegra X-12R centrifuge; Beckman Coulter, USA) and resuspended in 500 µl binding buffer. A volume of 5 µl Annexin V-FITC and 5 µl propidium iodide was added and mixed gently, and the cells were stained in the dark for 10 min at room temperature. The cells were analysed immediately by flow cytometry (BD FACSCalibur, BD Bioscience, San Diego, CA) and analysed using Flowjo software (FlowJo, Ashland, OR). The experiment was repeated three times.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!