We constructed circBMPR2-overexpressed vector as previously reported.48 (link) Briefly, the sequences of exons 2 and 3 of BMPR2 with a full length of 342 bp was subcloned into a pLCDH-ciR vector (RiboBio, Guangzhou, China) to generate pLCDH-circBMPR2 constructs. The subcloned sequence containing a front circular frame (SA), back circular frame (SD) of circRNA biogenesis and full length of circBMPR2, and 5′-TGAAATATGCTATCTTACAG-circBMPR2-GTGAATATATTTTTTCTTGA-3′ was directly synthesized. The pLCDH-ciR empty vector was used as an NC. For the knockdown experiments, the small interfering RNA (siRNA) target sequences for circBMPR2 were as follows: sense: 5′-CACCACUCACUUCGCAGAATT-3′; antisense: 5′-UUCUGCGAAGUGAGUGGUGTT-3′. The sequences for NC siRNA were as follows: sense: 5′-UUCUCCGAACGUGUCACGUTT-3′; antisense: 5′-ACGUGACACGUUCGGAGAATT-3′. The procedure of transfection was performed using Lipofectamine 2000 (Invitrogen) as previously reported.48 (link)
Plcdh cir vector
The PLCDH-cir vector is a laboratory tool used for molecular biology research. It serves as a circular plasmid DNA construct that can be utilized in various experimental procedures. The core function of this vector is to provide a platform for DNA manipulation and expression studies, though its specific applications may vary depending on the research context.
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10 protocols using plcdh cir vector
Overexpression and Knockdown of circBMPR2 in Cancer Cells
We constructed circBMPR2-overexpressed vector as previously reported.48 (link) Briefly, the sequences of exons 2 and 3 of BMPR2 with a full length of 342 bp was subcloned into a pLCDH-ciR vector (RiboBio, Guangzhou, China) to generate pLCDH-circBMPR2 constructs. The subcloned sequence containing a front circular frame (SA), back circular frame (SD) of circRNA biogenesis and full length of circBMPR2, and 5′-TGAAATATGCTATCTTACAG-circBMPR2-GTGAATATATTTTTTCTTGA-3′ was directly synthesized. The pLCDH-ciR empty vector was used as an NC. For the knockdown experiments, the small interfering RNA (siRNA) target sequences for circBMPR2 were as follows: sense: 5′-CACCACUCACUUCGCAGAATT-3′; antisense: 5′-UUCUGCGAAGUGAGUGGUGTT-3′. The sequences for NC siRNA were as follows: sense: 5′-UUCUCCGAACGUGUCACGUTT-3′; antisense: 5′-ACGUGACACGUUCGGAGAATT-3′. The procedure of transfection was performed using Lipofectamine 2000 (Invitrogen) as previously reported.48 (link)
Regulating circ_0018414 and DKK1 in LUAD
Overexpression of circ-ITCH in BCa cells
Regulation of Gastric Cancer Cell Lines by CircRNA hsa_circ_0072309
The coding sequence of hsa_circ_0072309 was cloned into the PLCDH-cir vector (Guangzhou RiboBio Co., Ltd.) for hsa_circ_0072309 overexpression. The 100 nM overexpression vector (Oe)-circ_0072309 or an empty vector, used as negative controls, (Vector Laboratories, Inc.; Maravai Life Sciences) were transfected into the AGS cells (2×106/well) using Lipofectamine® 3000 reagent (Invitrogen; Thermo Fisher Scientific, Inc.), following the manufacturer's instructions. After 48 h transfection, the AGS cells were used for further experiments and reverse transcription-quantitative (RT-q) PCR was performed to confirm the transfection efficiency.
Generation of circRNA-overexpression and knockdown models
Establishing Circ_SFMBT2 Overexpression and Knockdown Models
Overexpression of circ_0008726 in cells
Overexpression of circCACTIN and TGFBR1
Overexpression of hsa_circ_0072309 in Breast Cancer Cell Lines
MCF-7 and T47D cells stably overexpressing hsa_ circ_0072309 were constructed as previously reported.13 (link) In brief, the coding sequence of hsa_circ_0072309 was inserted into the PLCDH-cir vector (Ribobio, Guangzhou, China). The lentiviral vector was constructed by Hanbio (Shanghai, China). Transfection was performed in accordance with the manufacturer’s instructions. MCF-7 and T47D cells were selected with 0.5 µg/mL puromycin (Sigma-Aldrich Co., St Louis, MO, USA) for 2 weeks. MiR-492 mimics (5’-AGGAC-CUGCGGGACAAGAUUCUU-3’) or negative controls were synthesized by Genepharma (Shanghai, China) and transfected into cell lines using Lipofectamine 2000 (Invitrogen, Thermo Fisher Scientific) following the manufacturer’s instructions. Transfection efficiency was confirmed through qRT-PCR.
Overexpressing hsa_circ_0023409 in Gastric Cancer
For transient transfection, miR-542-3p mimics and the negative control (NC) mimic, as well as the miR-542-3p inhibitor were purchased from RiboBio. The miR-542-3p mimics or its NC was transfected into HGC-27 cells. MKN45 cells were transfected with miR-542-3p inhibitor or its NC inhibitor. The transfections were mediated by Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions for 6 h at 37°C.
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