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4 protocols using pd minitrap g 25 desalting column

1

Biotinylation of RBD and ACE2-Fc

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The Biotinylation Kit (Genemore, Suzhou, Jiangsu, China) was used for biotinylation of RBD and ACE2-Fc following the manufacturer’s protocol. Briefly, the protein was dissolved in PBST (PBS (pH 7.4) supplemented with 0.02% Tween 20) with a concentration greater than 2 mg/mL and incubated with biotin in the dark at room temperature for 1 h. The solution was subsequently loaded onto the PD MiniTrap™ G-25 Desalting Column (Cytiva) pre-equilibrated with PBST, then eluted with PBST.
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2

Binding Kinetics of Bacterial and Human ClpP

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This experiment was performed using Octet RED96 (ForteBio). The SaClpP and HsClpP proteins were biotinylated in PBS buffer at room temperature for 1 h. Then the biotinylated proteins were collected using a PD MiniTrap™ G-25 Desalting Column (cytiva). The streptavidin biosensors were incubated in PBST (PBS with 0.5% Tween-20) containing 0.5% DMSO for 10 min followed by loading with 50 μg/mL biotinylated SaClpP or HsClpP. The reference control applied a duplicate set of sensors that was incubated only in PBST with 0.5% DMSO. Various concentrations of (R)- and (S)-ZG197 were used to calculate the binding curve. The detection was conducted with a standard protocol in 96-well black plates with a total volume of 200 μL at 30 °C. BLI data were collected using Octet Acquisition 11.0. The signals were analyzed by a double reference subtraction protocol to calculate the binding kinetics using Octet Analysis 11.0. The Kd values were calculated from the steady-static fit curve.
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3

Recombinant Mouse IL9 Protein Production

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The recombinant mouse IL9 (rIL9) gene with a C-terminal hexahistidine and ALFA tag was cloned between the BamHI and NotI site in the pVL1393 baculovirus transfer vector. The recombinant baculovirus was generated by cotransfection of the BestBac 2.0v linearized baculovirus genome (Expression Systems) into Sf9 insect cells (Thermo Fisher Scientific). The rIL9 protein was produced by infecting High Five insect cells (Thermo Fisher Scientific) with the recombinant baculovirus. The secreted rIL9 protein was purified by Ni-Sepharose chromatography (GE Healthcare). After cleavage by thrombin to remove the hexahistidine and ALFA tag, the mIL9 protein was further purified by SP-Sepharose (GE Healthcare) cation-exchange chromatography and Superdex-200 gel filtration chromatography (GE Healthcare) equilibrated with a buffer containing 20 mmol/L Tris pH 8.0, 200 mmol/L NaCl, and 0.1 mmol/L phenylmethylsulfonyl fluoride. The protein sample buffer was changed into PBS (Gibco) using PD MiniTrap G-25 desalting columns (Cytiva). Endotoxin was removed from rIL9 using Pierce High-Capacity Endotoxin Removal Resin (Thermo Fisher Scientific), and the protein samples were sterilized by 0.2 μmol/L sterile membrane filtration. The protein concentration was determined using the Pierce BCA Protein Assay Kit (Thermo Fisher Scientific).
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4

Expression and Purification of VH Domains

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Rosetta2 cells were transformed with the corresponding pET24a-based plasmids containing the VH domain open reading frames and plated onto LB again containing 50 μg/mL kanamycin and 34 μg/mL chloramphenicol. Single colonies were grown on 4 mL TB media supplemented with 50 μg/mL kanamycin and 34 μg/mL chloramphenicol, at 37 oC. Once OD600nm = 1.5–2, the temperature was lowered to 20 oC, 0.5 mM IPTG was added, and the culture was grown overnight, with agitation. The cultures were pelleted by centrifugation, and resuspended in 1.3 mL VH lysis buffer (100 mM HEPES pH 8.0, 500 mM NaCl, 10 mM Imidazole, 10% glycerol, 10U Benzonase (Merck), 10% n-Dodecyl ß-D-maltoside, 1 mg/mL lysozyme, 1 mM MgSO4, 1× protease inhibitor cocktail (Nacalai Tesque)), and lysed through three freeze-thawing cycles at −80 °C and RT. The lysate was centrifuged at 3320 × g for 20 min at 4 oC, and the supernatant was transferred onto a purification column containing 200 µL of Ni-NTA resin (Thermo Fisher), and incubated for 15 min at RT. The column was washed with 10 column volumes of VH wash buffer (20 mM HEPES pH 8.0, 500 mM NaCl, 25 mM Imidazole, 10% glycerol) and eluted with 5 column volumes of VH elution buffer (20 mM HEPES pH 8.0, 500 mM NaCl, 500 mM Imidazole 10% glycerol). The samples were immediately desalted into PBS using PD MiniTrap G-25 desalting columns (Cytiva).
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