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3 protocols using sephin1

1

FRAP Analysis of Axonal Translation

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Fluorescence recovery after photobleaching (FRAP) experiments were conducted at 37°C, 5% CO2 as previously described (40 (link)). Briefly, dissociated adult mouse DRG cultures transfected with the GFPMYR5’/3’khsrp were equilibrated in culture medium as above except phenol red was excluded. A region of interest (ROI) in the most distal axon of dissociated DRG neurons was photobleached with 488 nm argon laser set at 100% power for 80 frames at 0.65 s each. Pre-bleach and post-bleach signals were captured using 70% power for 488 nm laser line every 30 s (2 for pre-bleach and 30 for post-bleach). Translation dependence for recovery was tested by pre-treating DRG cultures with 100 μg/ml anisomycin (Sigma) or 150 μg/ml cycloheximide (Sigma) 20 min prior to photobleaching. For testing Ca2+-dependent translation by FRAP, transfected DRG cultures were pretreated with 1 μM thapsigargin (Sigma), 3 μM BAPTA-AM (Sigma), 90 μM GSK260614 (Bio-Techne Corp/Tocris, Minneapolis, MN) or 50 μM Sephin1 (Apexbio, Houston, TX). Leica SP8X confocal microscope was used for imaging at 37°C, 5% CO2 with 63X/NA 1.4 oil immersion objective. Pinhole was set to 3 Airy units for pre-bleach, bleach, and post-bleach sequences to ensure full thickness excitation of the axon. ROIs were 40 × 40 μm and at least 250 μm from the soma.
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2

Immunostaining Techniques for Cellular Stress

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Immunohistochemistry—Sudan Black solution was purchased from Millipore Sigma (#S2380). Anti-Nogo-A (11C7) antibody was provided by the Brain Research Institute, University of Zurich (17356385). G3BP1 (#181150), PABP (#21060), ATF4 (#31390), and anti-GFAP (#ab4674) antibodies were purchased from Abcam. p4E-BP1 (#2855S) antibody from Cell Signaling.
Immunocytochemistry—Anti-O4 antibody (#MAB1326) was purchased from RnDsystems. Anti-mouse (#56574) or anti-rabbit (#181150) G3BP1, PABP (#21060), and hnRNP A1 (#4791) antibodies were purchased from Abcam. Phosphorylated eIF2α (#701268) and phosphorylated 4E-BP1 (#2855S) from ThermoFisher and Cell Signaling, respectively. TDP-43 (#10782-2-AP) antibody was purchased from Proteintech.
Secondary antibodies—Goat anti-rabbit (#A11034) and anti-mouse (#A21121) Alexa Fluor 488; goat anti-rabbit (#A21428) Alexa Fluor 555 and Hoescht (#33258) were purchased from Invitrogen. Alexa Fluor 647 (#1021-31) from Southern Biotech and goat anti-rabbit CY3 (#111-166-047) from Jackson ImmunoResearch.
Reagents—TNFα (PHC3016) and IFNγ (PHC4031) were purchased from ThermoFisher Scientific. Sephin1 was purchased from ApexBio (#A8708). ISRIB (#SML0843) and Cycloheximide (#4859) from Sigma. Torin1 (#4247) from Tocris Bioscience. 2-deoxy-D-glucose (2DG) and Sodium Arsenite from Sigma. CP (91149) from Selleckchem.
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3

Induction of Cellular Stress Responses

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The MEFs used were described previously (Scheuner et al., 2001 (link)). The cells were grown in high glucose Dulbecco’s modified Eagle’s medium (DMEM) (Thermo Fisher Scientific, 11960044) supplemented with 10% fetal bovine serum (Thermo Fisher Scientific, 26140079), 1X Penicillin-Streptomycin-Glutamine (Thermo Fisher Scientific, 10378016) at 37°C and 5% CO2. For all experiments, cells were subcultured 24 hours prior to the experiment so that cells were ~80% confluent at the time of the experiment. GADD34−/− MEFs were a gift from D. Ron (Novoa et al., 2003 (link)). Hyperosmotic stress was induced with Sorbitol (Sigma-Aldrich, S1876). Other chemicals used in this study include Cycloheximide (CHX) (100 μg/mL) (Sigma-Aldrich C7698), Harringtonine (2 μg/mL) (LKT Laboratories, H0169), Sephin1 (Apexbio, A8708), Sal 003 (1 μM) (Tocris Bioscience, 3657), Torin 1 (250 nM) (Tocris Bioscience, 4247), Hippuristanol (1 μM) (a generous gift from Dr. Junichi Tanaka, University of the Ryukyus, Japan) (Bordeleau et al., 2006 (link)) and CCCP (10 μM) (Sigma-Aldrich, C2759).
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