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9 protocols using mmp 8

1

Immunodetection of MMP-8 and Cathepsin K in Eroded Dentin

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A total of two dentin slices that received erosive challenges were used to confirm the presence of MMP-8 and catK in eroded dentin. After incubation with goat serum at 37°C for 30 min, the specimens were incubated at 4°C for 20 h with one of the respective antibodies at 1:100 dilutions: MMP-8 (rabbit anti-human, Abcam, USA) and catK (mouse anti-human, Abcam, USA). The specimens incubated with MMP-8 and catK primary antibodies were then incubated in the dark at 37°C for 1 h with the respective fluorescent secondary antibodies at 1:200 dilutions, respectively (goat anti-rabbit conjugated with Alexa Fluor® 488, Abcam, USA and goat anti-mouse conjugated with Alexa Fluor® 647, Abcam, USA). Phosphate-buffered saline (PBS) was used to wash the excess antibodies during the procedure.
Inverted confocal laser scanning microscopy (CLSM) (TCS SP8, Leica, Germany) was used to observe immunolabeled MMP-8 (excitation/emission: 495/519 nm) and catK (excitation/emission: 655/700 nm) in eroded dentin. Dentin slices were also imaged in the bright field (BF).
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2

Quantification of Secreted MMPs and TIMP-1

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Secreted MMP-8 (Abcam, USA), MMP-3 (R&D, USA) and TIMP-1 (Thermo, USA) were analyzed by sandwich immunoassay according to manufacturer's protocols using supernatants from infected and uninfected explants. For MMP-3 and TIMP-1, primary antibody coating was performed overnight at RT. After 2 h of plate blocking, the supernatants were incubated for 2 h at RT. The plates were washed four times and then incubated with the detection antibody for 2 h. Streptavidin-HRP substrate was added for 20 min. After the addition of stop solution, readings were performed at 450 and 570 nm in a Synergi H1 Biotek spectrophotometer.
For the MMP-8 ELISA, the same steps were performed except the primary antibody was already coated on the plate, and the samples were incubated overnight at RT.
Statistical analysis was performed using the Wilcoxon test, and differences were considered statistically significant at p < 0.05. For ELISA analysis, four different samples were evaluated in triplicate.
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3

Western Blot Analysis of Oxidative Stress Markers

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Equal amounts of protein were separated by SDS-PAGE and transferred to nitrocellulose membranes, and the membranes were blocked using 5% skim milk in Tris-buffered saline with Tween-20 (TBST). After 1 h, the membranes were incubated with primary antibodies against MMP-8 (1:1000, Abcam), the phospho- or total form of MAP kinases (1:1000, Cell Signaling), HO-1, NQO1, MnSOD, catalase, Nrf2, c-Jun, and lamin A (1:1000, Santa Cruz) at 4 °C overnight. Membranes were incubated with horseradish peroxidase-conjugated secondary antibodies (1:2000 dilution in TBST; Bio-Rad Laboratories), and an enhanced chemiluminescence detection kit was used for evaluations (Thermo Fisher Scientific, Waltham, MA).
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4

Protein Expression Analysis by Western Blot

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Protein samples were loaded at 100 μg/well into a 10% SDS-PAGE gel for electrophoresis and transferred onto nitrocellulose membranes (PALL, New York, NY, USA). Next, the membranes were blocked in the 5% defatted milk for 2 h and incubated on a shaker at 4 °C overnight with the primary antibody, TIMP-1 (Abcam), MMP-3 (Abcam), MMP-8 (Abcam), or GAPDH (Zhongshanjinqiao, Inc., Beijing, China) as an internal control.
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5

Molecular Mechanisms of XZK-mediated Cardioprotection

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XZK powder was kindly provided by the WBL Peking University Biotech Co., Luye Pharma Group (Beijing, China). 7-ketocholesterol (7-KC), Oil red O and sirius red were purchased from Sigma-Aldrich (St. Louis, MO, USA). Atorvastatin was obtained from Pfizer Ltd. (New York, NY, USA). The antibodies against α-actin, β-actin, MMP8, MMP13, TNFα, phosphorylated IRE1α (p-IRE1α), IRE1α, eIF2α, PERK and IκBα were from Abcam (Cambridge, MA, USA); antibodies against BiP, phosphorylated PERK (p-PERK), phosphorylated eukaryotic initiation factor 2α (p-eIF2α), spliced x-box binding protein 1 (s-XBP1), cleaved PARP, and active caspase-3 were from Cell Signaling Technology (Beverly, MA, USA); and antibodies against CCAAT-enhancer-binding protein homologous protein (CHOP) and ATF6 were from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). Secondary antibodies including Alexa Fluor 488-labeled donkey anti-rabbit antibody, Alexa Fluor 647-labeled goat anti-rat antibody, and Alexa Fluor 555-labeled donkey anti-mouse antibody were from Invitrogen (Carlsbad, CA, USA). The TUNEL assay kit (In Situ Cell Death Detection kit) was from Roche (Mannheim, Germany), real-time PCR (qPCR) reagent kits were from TAKARA Biotechnology (Dalian, China), and 6-diamino-2-phenylindole (DAPI) was from Beyotime Biotechnology (Shanghai, China).
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6

Neutrophil Protein Isolation and Analysis

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The freshly isolated neutrophils were resuspended in dHBSS at a concentration of 5 × 106 cell/ml. The indicated reagents were added to the cells and incubated for 2 h at 37 °C. After the incubation, 1 ml supernatant was collected and concentrated by centrifugation through Amicon Ultra-0.5 (Millipore) to the same final volume of 50 μl. The residual neutrophil pellet was lysed and protein samples were prepared. Antibodies to phospho-p38 MAPK (Thr 180/Tyr 182; Cell Signaling), p38 MAPK (Cell Signaling) and MMP8 (Abcam, 1:1 000 for all) were used.
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7

Western Blot Analysis of MMP and Adhesion Molecules

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Cell lysates were obtained after the addition of radioimmunoprecipitation assay lysis buffer (Beyotime, Shanghai, China) containing a cocktail of protease inhibitors (KangChen, China) to the cells. Proteins were quantified using a bicinchoninic acid Protein Assay Kit (Thermo Fisher Scientific, Lafayette, United States). Equal amounts of protein were separated using 10% SDS-PAGE and transferred to PVDF membranes (Bio-Rad, Hercules, CA). Membranes were blocked in 5% skim milk for 1 h and subsequently incubated with primary antibodies against MMP-9 (Cell Signaling Technology, Boston, MA), MMP-1 (Proteintech Group, United States), MMP-8 (Abcam), vascular cell adhesion molecule-1 (VCAM-1) (Abcam), intercellular adhesion molecule 1 (ICAM-1) (Abcam), and GAPDH (KangChen, China) at 4°C overnight. Membranes were washed thrice with TBS-T, and then incubated with HRP-conjugated secondary antibodies at room temperature for 1 h. Protein signals were detected using an ECL detection system.
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8

Visfatin Gene Delivery via Lentiviral Vector

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A lentiviral vector containing the coding sequence of the visfatin gene was commercially sourced from Invitrogen (Shanghai, China). Recombinant human visfatin was purchased from Sigma-Aldrich (St. Louis, MO). Rabbit polyclonal anti-GAPDH was purchased from Cell Signaling Technology Inc. (Danvers, MA). Rabbit monoclonal anti-visfatin was purchased from Abcam (Cambridge, UK). Rabbit polyclonal antibodies to α-smooth muscle cell actin and MMP-8 were both purchased from Abcam (Cambridge, UK). Rat anti–mouse monoclonal antibody for macrophages was purchased from Abcam (Cambridge, UK). Rabbit polyclonal antibodies to phospho-NF-κB (p65) and phospho-IκBα were both purchased from Cell Signaling Technology Inc. (Danvers, MA). BAY11-7082 and SC-514, selective inhibitors of NF-κB, were both purchased from Sigma-Aldrich (St. Louis, MO). Rabbit polyclonal antibodies to smooth muscle-myosin heavy chain (SM-MHC), 22 kDa smooth muscle protein (SM22α), smooth muscle calponin (SM-Calponin), smooth muscle myosin light chain kinase (SM-MLCK), h-Caldesmon (h-CALD), Ki-67 and Osteopontin were all purchased from Bioss (Beijing, China). Rabbit polyclonal antibodies to MMP-1, MMP-2 and MMP-9 were also purchased from Bioss (Beijing, China).
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9

Quantifying Gingival MMP and RANKL

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Protein levels of matrix metalloprotease (MMP) and receptor activator of nuclear factor-κB ligand (RANKL) were assessed by WB analysis. The gingival tissue around the maxillary second molar was carefully removed and homogenized. After quantitative determination of protein concentration with the tissue BCA method, we executed WB analysis of the target protein and internal reference protein as previously described [27 (link)]. The exposed film was scanned directly, and the image format was converted with Image J software (NIH, Bethesda, MD, USA). The integrated optical density (IOD) values of the bands were read and analyzed with Total Lab Quant V11.5 (Newcastle upon Tyne, UK). Primary antibodies against β-actin, MMP-8, MMP-9, and RANKL were purchased from Abcam (Cambridge, MA, USA).
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