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11 protocols using eca 500 mhz spectrometer

1

NMR Spectroscopy of Phosphorus Compounds

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In a typical preparation,
100 μL of the supernatant and 600 μL of benzene-d6 were added to a screw-cap NMR tube (Wilmad-Labglass). 31P spectra were collected on a Varian Mercury Plus 400 MHz
spectrometer (162 MHz) or a JEOL ECA 500 MHz spectrometer (203 MHz)
with 1H decoupling. 31P NMR spectra of solutions
containing TOP were collected with 1024 scans with relaxation delay
0.5 s and processed in Mestrenova using 2 Hz apodization. 31P NMR spectra of solutions containing [PF6] were collected with 64 scans and relaxation delay 1 s and processed
using 5 Hz apodization. 19F spectra were collected on a
JEOL ECA 500 MHz spectrometer (476 MHz) with 16 scans and relaxation
delay 1 s and processed using 5 Hz apodization. Chemical shifts for 31P NMR spectra were externally referenced to 85% H3PO4 (δ = 0 ppm).
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2

NMR Spectroscopic Analysis of Metabolites

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1H-NMR spectra were acquired on a JEOL ECA 500 MHz spectrometer (JEOL Ltd., Tokyo, Japan). The supernatants (550 µL) were transferred to 5-mm NMR tubes and analyzed. Each spectrum was acquired with 128 scans, a spectral width of 15 ppm, and a constant temperature of 25 °C. Prior to statistical analysis, all 1H-NMR spectra were referenced to 0.03% TMS, automatically phased, baseline corrected (Whittaker smoother), subjected to removal of the solvent signals (DMSO-d6), and desaturated at the water peak.
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3

NMR Spectroscopy of Structural Compounds

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NMR spectra were recorded on a JEOL ECA-500 MHz spectrometer (JEOL, Tokyo, Japan) and processed with MestReNova 6.1.0 (Metrelab). Chemical shifts were referred to those of the solvent signals. The NMR data are provided in Tables S1–S4 and spectra in Figs. S1–S25.
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4

Quantification of Cyanobacterial Metabolite Excretion

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Synechococcus cultures used for excreted metabolite assays were grown photoautotrophically in 50 mL batches with an inoculation density of OD730 nm = 2.0. Cells were washed twice with A+(−N) media to remove media nitrogen before inoculation in either nitrogen-replete or nitrogen-deplete media for experimentation. Aliquots of cell suspension (1 mL) were removed from the culture at appropriate time points and centrifuged to pellet cell biomass. The resulting supernatant was filtered through a 0.45-μm silicon membrane and the filtrate used directly for high-performance liquid chromatography (HPLC) and nuclear magnetic resonance (NMR) spectroscopy. A Surveryor Plus (Thermo Scientific, Waltham MA) HPLC equipped with an Aminex fermentation monitoring column [(150 mm × 7.8 mm); Bio-Rad, Hercules, CA, USA] was used for HPLC analyses. 25 μL of filtrate was injected for isocratic elution using 8 mM H2SO4 as the mobile phase with a flow rate of 0.5 mL min−1 and a column operating temperature of 45°C. A refractive index (RI) detector operating at 50°C was used for metabolite identification and quantification. Metabolite peaks were integrated and quantified using standard curves constructed from serial dilutions of authentic standards (Sigma-Aldrich, USA). Proton NMR spectra were generated with a JEOL ECA 500 MHz spectrometer; 128 scans were used with water-suppression.
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5

Spectroscopic Characterization of Ruthenium Porphyrin Complexes

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Acetonitrile and methylene chloride were obtained from Fisher Scientific and distilled over P2O5 prior to use. All organic substrates for LFP kinetic studies were the best available purity from Aldrich Chemical Co. and were passed through a dry column of active alumina (Grade I) before use. Pyridine N-oxide was obtained from Aldrich and used as such. 2,6-Dichloropyridine N-oxide was prepared by oxidation of the corresponding pyridine precursors by H2O2 (50%) in trifluoroacetic acid according to the known procedure.50 5,10,15,20-Tetraphenylporphyrin free ligand (H2TPP)51 and its ruthenium(II) carbonyl complex RuII(TPP)(CO) (6) were prepared by literature methods.48 (link) Complexes 2 were prepared according to the literature procedure42 and purified by chromatography on basic alumina. All the compounds were characterized by UV-vis, 1H NMR and IR spectra, matching those reported data.
UV-vis spectra were recorded on an Agilent 8453 diode array spectrophotometer. IR spectra were obtained on a Bio-Rad FT-IR spectrometer. NMR was performed on a JEOL ECA-500 MHz spectrometer at 298K with tetramethylsilane (TMS) as internal standard. Chemical shrifts (ppm) are reported relative to TMS. X-band ESR spectra were recorded on a Varian E109E spectrometer equipped with a low-temperature dewar.
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6

Spectroscopic Characterization of Antimicrobial Compounds

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All melting points were determined using an Electrothermal Capillary melting point apparatus and are uncorrected. Infrared (IR) spectra were recorded as thin film (for oils) in NaCl discs or as KBr pellets (for solids) with a JASCO FT/IR-6100 Spectrometer (Japan) and values are represented in cm1. 1H NMR (500 MHz) and 13C NMR (125 MHz) spectra were recorded on a Jeol ECA 500 MHz spectrometer (Japan) using TMS as internal standard and chemical shift values were recorded in ppm on the δ scale. Silica gel TLC (thin layer chromatography) cards from Merck (silica gel precoated aluminium cards with fluorescent indicator at 254 nm) were used for thin layer chromatography. Visualization was performed by illumination with UV light source (254 nm). Column chromatography was carried out on silica gel 60 (0.063–0.200 mm) obtained from Merck. The mobile phase consisted of chloroform or chloroform/ethyl acetate 1/1 v/v. Tetracycline, gentamicin and ofloxacin standard antibiotic discs were purchased from Bioanalyse®, Turkey.
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7

NMR Characterization of Isolated Compounds

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Isolated compounds were dissolved in DMSO-d6 for structure elucidation via 1H-NMR analysis. NMR spectra (Figs. S5 and S6) were taken on a JEOL ECA-500 MHz spectrometer (JEOL, Tokyo, Japan) and processed using MestReNova 6.1.0 (Mestrelab). All chemical shifts (Table S4) are referenced to the shift of the solvent signal.
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8

Analytical Techniques for Compound Characterization

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Nuclear magnetic resonance (NMR) spectra were recorded using an ECA 500 MHz spectrometer (JEOL, Tokyo, Japan). Thin-layer chromatography analyses were performed using silica gel 60 F254 and RP-18 F254S plates (both with a depth of 0.25 mm; Merck, Darmstadt, Germany). The compounds were visualized by dipping the plates into 10% (v/v) H2SO4 (Sigma-Aldrich, St. Louis, MO, US) and then heat-treated at 300 °C for 15 s. Silica gels (60, 70–230, or 230–400A American Standard Test Sieve Series mesh; Merck) and reversed-phase silica gels (ODS-A 12 nm S-150, S-75 μm; YMC Co., Dinslaken, Germany) were used for the column chromatography. Soluble Epoxide Hydrolase Kit (10009658) and PHOME (10009134) were purchased from Cayman (MI, US).
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9

Characterization of Irradiated Molecular Dynamics

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To confirm the chemical structure, the samples were measured using ATR-FTIR (Attenuated total reflection-Fourier transformed infrared spectroscopy, Bruker TEMSOR 37, Bruker AXS. INC., Karlsruhe, Germany) over the range 650 to 4000 cm−1.
The X-ray photoelectron spectroscopy (XPS, VG Multilab 2000 Spectrometer, Thermo Scientific, Waltham, MA, USA) spectra of the irradiated MD was confirmed compared with pristine MD. The XPS was equipped with an Al Kα X-ray and then deconvoluted N1s spectra were obtained using XPS PEAK software (University of Hong Kong, China).
The nuclear magnetic resonance (NMR) spectra of radiated MD was observed by 500 MHz 1H-NMR (ECA 500 MHz spectrometer, JEOL, Tokyo, Japan) with averaged over 32 scans. Then, the MD and radiated MD solution was mixed in 0.5 mL Deuterium oxide-d solution, and NMR spectra were obtained.
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10

Spectroscopic Characterization of Organic Compounds

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The successful syntheses of various products were confirmed through Fourier transform infrared (FT-IR) spectra and 1H-Nuclear magnetic resonance (NMR). The Fourier transform infrared (FT-IR) spectra were recorded on Nicolet 6700 with Smart-iTR, equipped with liquid nitrogen-cooled MCT-A detector and diamond ATR crystal. 1H-NMR experiments were carried out using Jeol ECA 500 MHz spectrometer.
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