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7 protocols using anti alpha smooth muscle actin α sma

1

Comprehensive Immunohistochemical Analysis of PDAC Tumor Microenvironment

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Frozen OCT blocks of tumors were cut using a cryostat into 8-μm thick sections and were stained using anti-PNAd (MECA79), anti-human CD31 (WM59, BioLegend), anti-Caspase-3 (4-1-18, BioLegend), anti-Collagen I (abcam), anti-Collagen IV (abcam), anti-Fibronectin (abcam), anti-alpha smooth muscle Actin (α-SMA, abcam), HECA 452 (HECA-452, BioLegend), anti-human HLA-A,B,C antibody (W6/32, BioLegend) and anti-mouse/human Ki-67 (11F6, BioLegend) antibodies. DAPI (VECTASHIELD, Vector Laboratories Burlingame, CA) was used to stain the cell nuclei. The stained tissue sections were imaged using a fluorescent confocal microscope and an EVOS FL2 auto microscope. For immunohistochemistry (IHC) staining, the human post-mortem PDAC samples were stained with anti-mouse/human PNAd (MECA79).
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2

Lung Inflammation and Fibrosis Analysis

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The left lung was perfused with 4% paraformaldehyde solution and then embedded in paraffin. Hematoxylin and eosin (H&E) staining was performed on lung sections to evaluate tissue inflammation, and periodic acid–Schiff (PAS) staining was employed to detect goblet cell hyperplasia and submucosal gland hypertrophy. In addition, Masson’s trichrome (MT) staining was conducted to assess fibrosis.
For NLRP3 and caspase-1 immunohistochemical staining (IHS), lung sections from each paraffin block were deparaffinized with xylene and rehydrated in ethanol. Antigen retrieval was conducted by autoclaving the sections at 120 °C for 15 min in citrate buffer (pH 6.0). Then, the sections were incubated in 3% hydrogen peroxide for 15 min to inactivate endogenous catalase. Next, the sections were incubated with anti-NLRP3 (1:100, SAB, USA), anti-caspase-1 (1:200, Abcam, Cambridge, UK), and anti-alpha smooth muscle actin (α-SMA) (1:100, Abcam) antibodies overnight at 4 °C. Finally, the sections were incubated with streptavidin horseradish peroxidase, and the percentage of positively-stained area was calculated using ImageJ software.
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3

Antibody Characterization for Protein Analysis

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Isoproterenol (ISP) hydrochloride, bovine serum albumin (BSA), taurine, 2,3-butanedione monoxime, 2,2,2-tribromoethanol, and 2-methyl-2-butanol were purchased from Sigma (St. Louis, MO, USA). Collagenase type B was from Hoffmann-La Roche (Basel, Switzerland). Hyaluronidase was from Worthington Biochemical (Lakewood, NJ, USA).
Antibodies used were as follows: anti-PCAF (#3378S), anti-SMAD2 (#5339S), anti-SMAD2/3 (#8685S), and phospho-SMAD2/3 (#8828S) were from Cell Signaling Technology (CST, Danvers, MA, USA); anti-actin (#A2066) that recognized the pan-actin was from Thermo Fisher Scientific (Thermo Fisher Scientific, Waltham, MA, USA); anti-alpha-smooth muscle actin (α-SMA) (#ab5694), collagen type I alpha 1 (COL1A1) (#ab34710), and acetyl-lysin (#ab21623) were from Abcam (Cambridge, UK); β-actin (#sc-47778), normal mouse IgG (#sc-2025), and normal rabbit IgG (#sc-2027) were from Santa Cruz (Santa Cruz Biotechnology, Dallas, TX, USA); horseradish peroxidase (HRP)-conjugated secondary antibody against mouse IgG or rabbit IgG was from Cell Signaling Technology (Danvers, MA, USA); Alexa Fluor 488-conjugated anti-mouse IgG (#A110001) or rabbit IgG (#A110008) was from Thermo Fisher Scientific (Thermo Fisher Scientific, Waltham, MA, USA).
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4

Hydrogel-based hCSCs Culture and Characterization

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Briefly, fibrin derived hydrogels with encapsulated hCSCs (12 µL) were prepared between cover slips to yield thin samples. The thin hydrogel samples were recovered at different time points and washed with PBS. After washing, the hydrogel samples were fixed with 3.7% formalin solution in PBS (Sigma-Aldrich, India) for 10 min at RT and washed with PBS again. Immunohistochemistry (fluorescence) was performed to visualize the expression of scarless-wound healing related markers. Primary anti-CD73, anti-CD90 and anti-alpha smooth muscle actin (α-SMA) antibody were procured from Abcam. Goat anti-mouse and anti-rat antibodies (conjugated with Alexa Fluor 594 and Alexa Fluor 488; Thermo Fisher Scientific) were used as secondary antibodies. Briefly, after washing, the hydrogel samples were blocked in BSA (5% in PBS, 1 h) and were incubated with primary antibodies at 4 °C overnight (1:100 dilution in 1% BSA). The samples were then washed (PBS, 3 times, 5 min each) and incubated with an appropriate secondary antibody (1:200 dilution in 1% BSA) at room temperature for 1 h. The sections were then washed (PBS, 3 times, 10 min each), semi dried, and mounted with Vectashield antifade mounting medium containing DAPI (#H1200, Vector Labs, Burlingame, CA, USA). The sections were imaged under a fluorescence imaging system (Evos FL Auto 2).
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5

Immunofluorescence Staining of ECM Proteins

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The cells prepared as described above were washed with PBS, fixed with 4% paraformaldehyde phosphate (PFA) for 10 min, and permeabilized with 0.2% Triton X-100 for 3 min. Subsequently, the sections were incubated for 24 h at 4°C with primary antibodies and incubated with fluorescein-conjugated secondary antibodies for 1 h at room temperature. The primary antibodies used were anti-collagen type I alpha 2 (COL1A2) (1:200, Abcam, Cambridge, UK), anti-fibronectin 1 (FN1) (1:200, Abcam), anti-alpha smooth muscle actin (αSMA) (1:200, Abcam), anti-p-Smad3 (1:200, Cell Signaling Technology, USA), anti-snail family transcriptional repressor 2 (SNAIL2) (1:200, Invitrogen, Carlsbad, CA, USA), and anti-zinc-finger-enhancer binding protein 1 (ZEB1) (1:200, Proteintech, Rosemont, IL, USA). Cover glasses were mounted using VECTASHIELD mounting medium with 4,6-diamidino-2-phenylindole (DAPI, Vector Laboratories, Burlingame, CA, USA).
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6

Histological Analysis of Frozen Tissue

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Histological analysis of snap-frozen tissue was performed as previously described.16 (link) Snap-frozen tissue sections were stained with anti-alpha smooth muscle actin (αSMA; abcam), anti-F4/80, Ly6G (eBioscience), anti-active Casp3 (BD Biosciences), anti-proliferating cell nuclear antigen (PCNA; Cell Signaling). Casp3 activity was performed with a fluorescence assay according to the manufacturer’s instructions (Cell Signaling). Terminal deoxynucleotidyl transferase dUTP nick end labelling (TUNEL) staining was performed on liver sections according to the manufacturer’s instructions (Roche). Fluorescence images were taken with an Axio Observer fluorescence microscope (Zeiss). Quantification of fluorescence staining was analysed by ImageJ, with either measurement of the mean fluorescent intensity (MFI) or the numbers of positive signals.
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7

Antibody-based Adipocyte Characterization

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Rabbit polyclonal antibodies targeting PLIN1 or PLIN2 were generated as described previously27)
. Mouse monoclonal anti-human CD68 (1:100, Dako Cytomation, Glostrup, Denmark), mouse monoclonal anti-CD11c (1:100, Dako), mouse monoclonal anti-human CD163 (1:100, Leica Biosystems, Wetzlar, Germany), and anti-alpha smooth muscle actin (α-SMA) (1:100, Abcam, Cambridge, UK) antibodies were purchased. Histological specimens and cells were blocked with 10% goat non-immune serum and were then incubated with a primary antibody overnight at 4℃. They were then stained using a DAB substrate kit (Nichirei Bioscience, Tokyo, Japan). For immunofluorescence, cells were cultured on coverslips placed in dishes and then incubated with fluorescently-labeled antibodies and Alexa Fluor 594-conjugated goat anti-rabbit IgG (Thermo Fisher Scientific, Waltham, MA, US) for 60 min, BODIPY lipid probes for triglyceride (Molecular Probes, Eugene, OR, US) for 60 min, and DAPI (Thermo Fisher Scientific). Images were acquired using a BZ-9000 microscope (Keyence, Osaka, Japan).
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