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Specord s600 spectrophotometer

Manufactured by Analytik Jena
Sourced in Germany

The Specord S600 is a high-performance spectrophotometer designed for precise and reliable absorbance measurements across a wide range of applications. It features a compact design, a large sample compartment, and advanced optics to deliver accurate and reproducible results.

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7 protocols using specord s600 spectrophotometer

1

Spectrophotometric analysis of enzymes and polymers

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Molar absorption coefficient determinations and kinetic measurements in bulk solution were carried out with a JASCO V-670 or a SPECORD S600 spectrophotometer (from Analytik Jena) using quartz cells with path length of either 1.0 cm or 0.1 cm. For the determination of the concentrations of concentrated enzyme or dendronised polymer stock solutions a NanoDrop One instrument was used (from ThermoFisher Scientific). For spectrophotometric quantifications in the flow-through experiments, a Cary 60 spectrophotometer (from Agilent Technologies) was used in addition to the SPECORD S600, using the same cells mentioned above.
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2

Enzymatic Activity Quantification Protocol

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One unit was defined as the amount of protein necessary to convert 1 µmol of substrate per minute. All enzyme measurements were performed using a Specord S 600 spectrophotometer (Analytik Jena) following the absorption of NADH at 340 nm.
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3

Enzyme Activity Assay Protocol

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Fifty to hundred micrograms of sample powder were homogenized in pre-cooled 20 mM Tris HCl buffer, pH 8.0, containing 1 mM sodium ethylenediaminetetraacetate (Na-EDTA), 0.1% Triton X-100, 100 mM NaCl, a cocktail of p2714 protease inhibitors (Sigma-Aldrich, Steinheim, Germany) using a Heidolph Brinkmann Tool 18F for Silent Crusher M (Fisher Scientific, Germany) at 16,500g. Extraction buffer was added to the sample in a ratio of 10 µl per 1 mg. The sample was homogenized three times for 10 s, with ten-second stops for cooling. Then the tubes with homogenate were centrifuged (1000g) for 10 min at 4 °C. The non-purified supernatant obtained during isolation was used to measure enzyme activity using a Specord S600 spectrophotometer (Analytic Jena, Jena, Germany) according to Moyes et al.39 (link),40 (link) (cytochrome oxidase) and Sidell et al.40 (link),41 (link) (citrate synthase), with modifications by Jakob et al.23 . The activity of each sample was measured in two dilutions (for example, 2 and 4 µl) at 15 °C. The reaction was initiated by adding substrates (cytochrome C for cytochrome c oxidase and oxaloacetate for citrate synthase).
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4

UV-VIS Spectroscopy of POSS-based Complexes

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UV–VIS measurements were performed using a Specord S600 spectrophotometer, associated with Win Aspect software version 2.3 (Analytik Jena AG, Jena, Germany).
Solutions of LPSQ/POSS-triazole-Py and LPSQ/POSS-amide-Py at different concentrations (cPy = 10−8 − 10−3 mol/L) were prepared in THF, CHCl3 and DMF and placed in 10 mm path length quartz cuvettes. Measurements in solid state were carried out for thin films spin coated on quartz plates from solutions of LPSQ/POSS-triazole-Py and LPSQ/POSS-amide-Py in chloroform (cPy = 10−6 mol/L).
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5

Carotenoid Transfer Kinetics in Proteins

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Absorbance spectra and kinetics of carotenoid transfer between CTDH and HCPs were measured in a Specord S600 spectrophotometer (Analytic Jena) at 23 °C. To study the carotenoid transfer from holo-proteins to apo-proteins, holo-HCPs to apo-CTDHs (1 holo-HCP per 2.5 apo-CTDHs molar ratio) and holo-CTDHs to apo-HCPs (1 holo-CTDH to 5 apo-HCP molar ratio) protein mixtures were incubated in 40 mM Tris-HCl buffer (pH 8) at 23 °C for 1 h in darkness. A triplicate of absorbance spectra were recorded for 1 h and carotenoid transfer was followed by changes in absorbance at 600 nm. To determine the percentage of carotenoid transferred, a spectral deconvolution was performed using Excel to fit the data to the sum of the reference spectra of the holo-proteins involved in the experiment (described in ref. 26 (link)). To study the carotenoid transfer from membranes to HCPs and CTDHs, 12 µM apo-dimers were incubated with an E. coli canthaxanthin-containing membrane suspension (48 µM canthaxanthin, measured by acetone extraction) at 33 °C for 1 h in darkness. Holo-protein formation was measured by absorbance spectroscopy after precipitation of membranes. The percentage of holo-protein formed was determined by comparing the spectra of 100% holo-proteins (at 12 µM) to those of the supernatant.
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6

Neutral Red Uptake Assay for Larval Viability

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Neutral red uptake is a common quantitative assay to determine cell viability and toxic effects of the compounds in vitro. This method was used to examine larval viability in freshly isolated larvae and in larvae after 72 h of incubation with 5 μM and 50 μM of SB, SCH, DHSB as well as in untreated controls under both types of conditions. In the assay we used the In vitro Toxicology Assay Kit Neutral Red Based (Sigma-Aldrich, Darmstadt, Germany) with some modifications. Briefly, larvae were transferred from flasks into 1.5 mL tubes (in triplicates/group) and filled with 1.0 mL of fresh RPMI medium containing 20 μg/mL of neutral red. Incubation involved mild shaking at 37 °C and was terminated after 60 min. After washing the larvae, they were homogenized in 1.5 mL of solubilization solution. The supernatant containing neutral red was collected into another tube after centrifugation. The optical density (OD) of the samples was measured at 540 nm in a Specord S600 spectrophotometer (Analytic Jena, Jena, Germany). Concentrations of neutral red expressed as OD for the actual amount of larval tissue were re-calculated for 50 mg of tissue in each sample, and these values were used to calculate the viability of larval cells (in %) relative to untreated control samples (100%) at each time point.
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7

Thermal Dynamics of Orange Carotenoid Protein

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Absorbance spectra, kinetics of photoactivation (illumination with 5000 µmol photons m - 2 s -1 of white light) and dark recovery of the OCP were measured in a Specord S600 spectrophotometer (Analyticjena) at 8, 12, 15, 19, 23, 27, 33 or 37 °C in 1 cm pathlength cuvette. Spectra were acquired from 250nm to 700nm for each time point.
The percentage of OCP R formed was calculated from the absorbance changes at 550nm and from spectral deconvolution. To study the effect of FRP, we added Synechocystis FRP (2.6 µM) just before turning off the light.
To study CTD-NTD complex formation, holo-CTDs (2.25 µM) were incubated with different concentrations of apo-NTD at 12°C for one hour in darkness. The percentage of OCP-like complexes was determined after spectral deconvolution (Supplementary Fig. 6).
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