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4 6 diamidino 2 phenylindol dapi

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4',6-diamidino-2-phenylindole (DAPI) is a fluorescent stain that binds strongly to adenine-thymine (A-T) rich regions in DNA. It can be used to visualize and quantify DNA in various biological applications.

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17 protocols using 4 6 diamidino 2 phenylindol dapi

1

Immunostaining of NF-κB p65 in MCM-treated NP cells

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Human NP cells were plated on a glass-bottom confocal dish and exposed to MCM for 48 h. The cells were fixed with 4% paraformaldehyde, permeabilized with 0.2% Triton X-100 in PBS for 15 min at room temperature, blocked with 5% bovine serum albumin (BSA; Millipore) in PBS, and then incubated with the primary antibodies overnight at 4 °C in 5% BSA. Anti-NF-κB p65 mouse monoclonal antibody (Santa Cruz) was used to detect the NF-κB p65 protein. Goat anti-mouse Alexa 555 secondary antibodies (Invitrogen) and 5% BSA were used for the secondary incubation in PBS for 1 h at room temperature. After washing in PBS, the plate was counterstained with 4′,6-diamidino-2-phenylindol (DAPI, Invitrogen). Images were acquired using the EVOS FL Auto cell imaging system (Thermo Fisher Scientific Inc., USA).
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2

Immunofluorescent Neuronal Labeling Protocol

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The samples were fixed with a 4% paraformaldehyde, 4% sucrose (Sigma Aldrich) in 2xPHEM buffer (60mM PIPES, 25mM HEPES, 10mM EGTA, 2mM MgSO4, pH 7.0 with KOH in DI H2O; Sigma Aldrich) for 15 minutes at room temperature. Fixed samples were rinsed three times with warm HBSS (5 minutes each), permeabilized for 10 minutes with 0.1% Triton X-100 (Sigma Chemical) in PBS and blocked with 2.5% goat serum (GS) diluted in HBSS (Invitrogen) for 1 hour at room temperature. To visualize neurons, samples were incubated for 30 minutes at room temperature with mouse anti-β-III-tubulin primary antibody (1:500 in 2.5% GS, Invitro-gen), rinsed in HBSS (3x, 5 minutes each) and incubated for 30 minutes at room temperature with goat-anti-mouse Alexa Fluor 488 IgG2b secondary antibody (Invitrogen) (1:1000 v:v in 2.5% GS). Samples were rinsed in HBSS (3x, 5 minutes each) prior to mounting with Prolong Gold Anti-fade containing 4′,6-diamidino-2-phenylindol (DAPI; Invitrogen) to label all cell nuclei. The sealed samples were stored at −20°C prior to imaging.
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3

Immunofluorescent Characterization of Stem Cells

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Cells were fixed with Mildform 20N (8% formaldehyde; Wako) for 30 min and permeabilized with 0.2% Triton X-100 (nacalaitesque) for 5 min. Fixed cells were blocked with Blocking One solution (nacalaitesque) for 1h. The primary antibodies used here were: rabbit anti-human Nestin (1:200; N-1602; IBL Ltd.), mouse anti-neuron specific βIII-tubulin antibody (1:500; TuJ-1; R&D Systems), mouse monoclonal anti-MAP2 antibody (1:500; Sigma-Aldrich) and anti-mouse β-catenin (1:1000; BD Bioscience, USA). The samples were washed for three times, and incubated with goat anti-mouse IgG F(ab’)2-TRITC (1: 100; Santa Cruz) and anti-rabbit IgG F(ab’)2 Alexa Fluor 555 conjugate (1: 1000; Cell Signaling Technology) at room temperature for 1 h. After three times of washing, the samples were counterstained with 4’-6-diamidino-2-phenylindol (DAPI, Invitrogen), and examined by confocal inverted microscope (Nikon Eclipse Ti, Japan). Fluorescent images of approximately 400 cells in at least 3 different areas were analyzed for Tuj-positive cells. DAPI was used to quantify the total number of cells.
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4

Quantifying Hydroxyl Radicals in Lung Tissue

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Frozen sections (5 μm) of the right lung were used. Hydroxyphenyl fluorescein solution (Sigma, USA) was diluted 1:500 and added to the lung tissue section for 30 min at room temperature. Sections were washed with phosphate-buffered saline (PBS), then stained with 4′,6-diamidino-2-phenylindol (DAPI; Invitrogen, USA). Images were analyzed by confocal microscopy.
To quantify hydroxyl radicals, lung tissue (100 mg) was ground up in liquid nitrogen, added to 500 ul PBS and centrifuged at 10 000 g for 20 min at 4 °C. Supernatants were transferred to Eppendorf tubes and analyzed as quickly as possible using a commercial colorimetric kit (Genmed, Scientifics, USA).
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5

Differentiation Capacity of hMSCs

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Differentiation capacity of hMSCs was performed using the Human Mesenchymal Stem Cell Function Identification Kit (R&D Systems, Minneapolis, MN, USA) according to the manufacturers' protocol. After 20 days under differentiation conditions, fatty acid binding protein-4 (FABP-4) and osteocalcin for adipogenic and osteogenic differentiation were fluorescently labeled, respectively. Nuclei were counter stained with 4′,6-diamidino-2-phenylindol (DAPI, Invitrogen, Carlsbad, CA, USA). Samples were analyzed using ELYRA PS.1 LSM 780 microscope (Carl Zeiss, Jena, Germany) and ZEN2011 software (Carl Zeiss, Göttingen, Germany).
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6

CRH-Induced ROS Formation Assay

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Fluorescence intensity was determined using 2,7-dichlorodihydrofluorescein diacetate (H2DCF-DA; Invitrogen). To measure CRH-induced ROS formation, DPCs and ORSCs were seeded in 6-well plates at a density of 5 × 104 cells/well. The DPCs and ORSCs were treated with 0.2–0.5 μM and 0.1–0.2 μM CRH, respectively, for 48 h at 37°C in a humidified atmosphere with 5% CO2. To assess the effects of ROS scavenging by the GL extract, DPCs and ORSCs were initially treated with 0.5 and 0.2 μM CRH, respectively, for 24 h. Subsequently, the cells were incubated with CRH in the presence or absence of the GL extract (20 μg/ml) for an additional 24 h. Cells were treated with H2O2 (200 μM) as a positive control for 2 h at 37°C. After treatment, the cells were washed twice with PBS and incubated with 20 μM DCF-DA in PBS for 30 min at 37°C in a humidified atmosphere with 5% CO2. After incubation, the cells were washed twice with PBS. Nuclei were counterstained with 4′,6-diamidino-2-phenylindol (DAPI, 1:1000, Invitrogen) for 1 min. The cells were washed again with PBS, and cytoplasm DCF-DA and nuclear DAPI staining was imaged using an inverted fluorescence microscope (Leica).
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7

Immunofluorescence Staining of hiPSC Aggregates

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hiPSC aggregates were embedded in optical cutting temperature compound (Tissue-Tek, Tokyo, Japan), and thin sections (20 μm thick) were fixed with 4% paraformaldehyde for 10 min at room temperature. The specimens were permeabilized with PBS containing 0.5% Triton X-100 (FUJIFILM Wako Pure Laboratory Chemicals, Osaka, Japan) for 5 min and blocked in Block Ace (Dainippon Sumitomo Pharma, Osaka, Japan) at 4 °C overnight. The specimens were then probed with primary antibodies against Oct3/4 (cat# sc-9081, Santa Cruz Biotechnology) at 4 °C overnight. After washing with Tris-buffered saline, the specimens were immersed in PBS containing 10% Block Ace and an Alexa Fluor 488-conjugated secondary antibody (Thermo Fischer Scientific) for 60 min at room temperature. Cell nuclei were stained with 4′,6-diamidino-2-phenylindol (DAPI, Thermo Fischer Scientific) for 20 min. After washing with PBS, the specimens were observed under a confocal laser-scanning microscope (Olympus, Tokyo, Japan).
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8

Biochemical and Immunological Reagents for Research

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T4 DNA ligase, NdeI, and EcoRI were obtained from New England Biolabs (Ipswich, MA, USA). Alexa Fluor 488- and 594-conjugated donkey secondary antibodies were obtained from Invitrogen (Carlsbad, CA, USA). Streptozotocin (STZ), D-glucose, and some reagents for the western blot analysis such as mouse anti-glial fibrillary acidic protein (GFAP), β-actin, and α-tubulin were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). Primary antibodies such as GLP-1, Tau, NF-κBp65, insulin receptor (IR)-β, and calbindin were purchased from Santa Cruz Biotechnology, Inc (Santa Cruz, CA, USA). Rabbit anti-parvalbumin, GLP-1R, hippocalcin, nuclear p84, and mitochondrial VDAC1 were obtained from Abcam (Cambridge, MA, USA). Isopropyl-β-thiogalactopyranoside (IPTG), LB broth, p-Tau, and 4′,6-diamidino-2-phenylindol (DAPI) were obtained from the Thermo Fisher Scientific (Waltham, MA, USA). Total dynamin related protein1 (Drp1) and optic atrophy1 (OPA) were obtained from BD Bioscience (Franklin Lakes, NJ, USA).
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9

Cytoskeleton and Proliferation of BMSCs

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The BMSCs were implanted on plates and held in full culture medium for 1, 3, and 7 days. The cytoskeleton morphology was evaluated, where the cells were washed with cold 1X PBS for 2–3 min, fixed in 4% paraformaldehyde (PFA) at room temperature (RT) for 15 min and permeabilized with phosphate buffered saline containing 0.1% Triton X (PBS-Tx-0.1%). The cytoskeleton was stained with tetramethylrhodamine isothiocyanate (TRITC)-phalloidin (Yeasen, China), while the nuclei were stained with 4′,6-Diamidino-2-phenylindol (DAPI, ThermoFisher Scientific, USA). The samples were imaged using a fluorescence microscope (Olympus, Japan). The BMSC proliferation induced by different pore channels was evaluated, where cells were cultured in EdU-containing medium (diluted to 1: 1000, 1 mg L-1; Ribobio, China). The samples were collected, and the plates were stained using a 5-ethynyl-2′-deoxyuridine (EdU) Apollo kit (Ribobio, China) according to the manufacturer's instructions, while the cell nuclei were counterstained with Hoechst 33342. The samples were observed using a fluorescence microscope (Olympus, Japan), where statistical analysis of the images was used to calculate the percentage of EdU positive cells.
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10

Apoptosis Profiling of PC12 Cells

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Using the In Situ Cell Death Detection Kit (Roche, Mannheim, Germany), differentially treated PC12 cells were stained for nnheim, Germany), differentially treated PC12 cells were stained for assay. To visualize cell nuclei, cells after staining were counterstained with 4′,6-diamidino-2-phenylindol (DAPI; Thermo Fisher Scientific) solution under dark at room temperature for 5 min. A fluorescence microscope (Olympus, Tokyo, Japan) was used to capture the image of fluorescence.
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