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Pageruler plus prestained ladder

Manufactured by Thermo Fisher Scientific
Sourced in United States

The PageRuler Plus Prestained Ladder is a protein molecular weight marker used for the determination of molecular weights of proteins in SDS-PAGE. It provides a pre-stained ladder of 11 proteins with molecular weights ranging from 10 to 250 kDa.

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7 protocols using pageruler plus prestained ladder

1

SDS Stability Assay for Protein Analysis

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The SDS stability assay is based on previously reported assays [35] (link), [36] (link). To 55 µM protein in pH 7 buffer either a 10-fold molar excess of biotin-5-fluorescein or the same volume of pH 7 buffer was added. Due to the high isoelectric point of avidin, A/A2-1, A/A2-B and A/A2-B I109K (pI>9), the proteins (including AVR2, pI = 4) were acetylated by adding a 40-fold molar excess of Sulfo-NHS-acetate (Thermo Scientific) [35] (link). The protein sample was divided into equal aliquots and incubated for 20 min at 20, 40, 50, 60, 70, 80, 90, or 100°C. After incubation, the same volume of 2× sample buffer (60 µM Tris-HCl, pH 6.8, 25% glycerol, 0.01% Bromphenol blue) was added, before loading 5 µg of the protein in a 15% acrylamide-bisacrylamide gel. To detect the bound biotin-5-fluorescein, the gels were analyzed under UV in a Molecular Imager Gel Doc XR+ System (BioRad Laboratories, Hercules, CA, USA), before Coomassie Brilliant Blue staining. As a control, proteins were incubated in denaturizing SDS sample buffer (60 µM Tris-HCl, pH 6.8, 25% glycerol, 2% SDS, 0.01% Bromphenol blue, 0.5% β-mercaptoethanol) for 20 min at 100°C. PageRuler Plus Prestained Ladder (Thermo Scientific) was used as molecular weight marker.
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2

Ang II and nebivolol signaling study

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Ang II and nebivolol were obtained from Sigma-Aldrich (St. Louis, MO, USA), and L-NAME was obtained from Calbiochem (La Jolla, CA, USA). Antibodies for phospho-mTOR (pSer2448), mTOR, phospho-p70S6K (pThr389), p70S6K, phospho-RPS6 (pSer235/236), and RPS6 were obtained from Cell Signaling Technology Inc. (Boston, MA, USA). ECL substrates for high-sensitivity Western blot detection, Pageruler plus prestained ladder, and SuperScript™ III First-Strand Synthesis System were obtained from Thermo Fisher Scientific (Waltham, MA, USA). TRIzol™ Reagent was obtained from Invitrogen (Waltham, MA, USA), and PowerUp SYBR Green master mix was obtained from Applied Biosystems (Thermo Fisher Scientific, Waltham, MA, USA).
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3

Microbial Transglutaminase Peptide Assay

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mTGase was donated by Jiangsu Yiming Biological Products Co., Ltd. (Jiangsu, China) and purified using AKTA purifier (CE Healthcare, UK), see additional experimental section and Fig. S1 in ESI for details. Twenty-two peptides, including one control peptide CP (CALNN) and twenty-one mTGase substrates (as shown in Table 1), were commercial synthesized by ChinaPeptides Ltd. (Shanghai, China). Collagen was purchased from Gentihold Science & Technology Co., Ltd (Beijing, China). BCA protein Assay kit and PageRuler Plus Prestained ladder were purchased from Thermo Fisher scientific Co., Ltd (Shanghai, China). Other chemicals were analytical grade. Milli-Q water (18.2 MΩ cm) was used in all experiments.
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4

Nuclear Protein Extraction and Western Blot Analysis

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Nuclear proteins from kidney marrow cells were extracted using the Thermo Scientific™ NE-PER Nuclear and Cytoplasmic Extraction Kit (Thermo Fisher Scientific, Waltham, MA, USA) following the instructions of the manufacturer. After extraction, these proteins were electrophoresed on Mini-PROTEAN® TGX Stain-Free™ Precast 10% gels (Bio-Rad, Hercules, CA, USA), transferred onto a 0.2 µm PVDF membrane using the Trans-Blot Turbo Transfer System (Bio-Rad, Hercules, CA, USA), and processed using standard methods. As primary antibodies, rabbit anti-human RUNX1 antibody (1:400 in 5% BSA, ab 23980, Abcam, Cambridge, UK) and rabbit anti-β-Actin (1:60,000 in 5% BSA, sc-1615-R; Santa Cruz Biotechnology, Santa Cruz, CA, USA) were used. As a secondary antibody, the goat anti-rabbit IgG antibody was conjugated to Horseradish Peroxidase (1:7000 in 5% BSA, #7074S, Cell Signaling Technology, Danvers, MA, USA). Chemiluminescence was initiated with Cell Amersham ECL Reagent (GE Healthcare, Chicago, IL, USA) and detected using ChemiDocTM XRS+ with Image LabTM Software (version 6.0.1, Bio-Rad, Hercules, CA, USA). Protein sizing relied on the PageRuler Plus prestained ladder (Thermo Fisher Scientific, Waltham, MA, USA), and image processing was performed with Fiji (ImageJ, v. 1.59i).
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5

SDS-PAGE Protein Denaturation and Separation

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Crude bacterial lysates were mixed 1:4 parts with 4× Laemmli loading buffer and then boiled for 10 min to denature the proteins. Twenty microliters of each of these samples were loaded onto 15% SDS-PAGE gels, along with 15 μL of PageRuler Plus prestained ladder (ThermoFisher Scientific). Gels were run at 200 V for a 45 min and then stained in Quick Blue Coomassie stain (Triple Red, Bucks, UK) prior to photography.
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6

SDS-PAGE Protein Analysis Protocol

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Full-length proteins were analysed by 12%–15% SDS-PAGE depending on expected protein size. Gels were cast according to the protocol of Sambrook and Russell [26 ]. 0.5 μg of protein sample was mixed with 5x Lane Marker Reducing Sample Buffer (Thermo Scientific 39000) and boiled at 95°C for 5 min. PageRuler Plus Prestained Ladder (Thermo Scientific 26619) and Spectra Multicolor Low Range Protein Ladder (Thermo Scientific 26628) were used as size marker. The samples were stacked for 10 min at 60 V, followed by separation for 60 min at 110 V. The gels were then stained with PageBlue Protein Staining Solution (Thermo Scientific 24620).
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7

SDS-PAGE Protein Separation and Visualization

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10 μL sample aliquots containing SAB (5% SDS, 50 mM ethylendiaminetetraacetic acid (EDTA), 0.5 mM Tris and 7 mM β-mercaptoethanol and bromophenol was added until dark blue) were denatured at 95 • C for 5 min. A 4-20% bis-tris gel (Invitrogen, USA) was submerged into an X-Cell Surelock electrophoresis chamber (Thermo Fisher, UK) containing running buffer (50 mM Tris base, 38.5 mM glycine and 7 mM SDS). 10 μL of the denatured sample was added to each well, using a PageRuler Plus Prestained ladder (Thermo Fisher, UK) 10-180 kDa as reference. Electrophoresis was performed using a continuous voltage of 200 V to the system for 60 min. The gel was removed from the cast and stained with Coomassie Blue™ and distained using solution containing 20% ethanol and 5% acetic acid for up to 2 h.
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