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19 protocols using wortmannin

1

Podocyte glucose and wortmannin response

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The E11 podocyte cell line (Cell Line Service, Baden-Wuerttemberg, Germany) was used for this study. Differentiated podocytes were cultured in RPMI-1640 medium (Invitrogen, Waltham, MA, USA) containing 10% fetal bovine serum and penicillin/streptomycin (100 U ml−1 and 100 mg ml−1, respectively) and incubated at 33 °C in a 5% CO2 atmosphere. Podocytes were used between passages 33 and 35. The podocytes were divided into three groups: the normal glucose group (5 mM D-glucose, control), high glucose group (25 mM D-glucose, diabetes) and wortmannin-treated diabetic group (25 mM D-glucose+0.32 μM wortmannin). Podocytes from the three groups were incubated in culture medium containing either 5 or 25 mM glucose for 24 h. After 24 h of incubation, the wortmannin group incubated with high glucose was treated with wortmannin (0.32 μM, LC Laboratories, Woburn, MA, USA); the half-maximal inhibitory concentration of wortmannin was determined by CCK-8 assay (data not shown). At 24 h after treatment with wortmannin, RNA and proteins were extracted from the podocytes.
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2

Peptide Feeding Assay with Wortmannin

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sNPF peptide, AQRSPSLRLRF-NH2, 98% purity (Celtek Peptides, Franklin, TN) and DTK peptide, APTSSFIGMR-NH2, 98% purity (Bio Basic Inc., Markham, Ontario, Canada) were each dissolved in saline to a final concentration of 10 μM. Wortmannin (LC Laboratories, Woburn, MA) was dissolved in DMSO at stock concentrations of 10 mM. Flies were fed overnight with 200 μl of 4% sucrose solution, or plus 25 nM Wortmannin.
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3

Kinase Inhibitors Modulate Aβ-Induced Responses

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Cells were plated in the presence of retinoic acid (5 × 105/6-well) on day 1, treated with tested compounds (5 μM) plus induced Aβ-GFP expression with doxycycline (5μg/ml) on day 2, as stated. Kinase inhibitors U0126 (an inhibitor of ERK) or wortmannin (an inhibitor of PI3K) (LC Laboratories, Woburn, MA, USA) (10 μM) were added on day 6. The cells were collected on day 8 for BDNF, BCL2, BAX, total/phosphorylated TRKB, ERK, AKT, and CREB protein analysis as previously stated.
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4

Inhibitor Preparation and Dosage

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Roscovitine (Calbiochem), wortmannin (LC Laboratories), and BX795 (Enzo Life Sciences) were dissolved in DMSO at concentrations of 50, 20, and 6 mM, respectively, as stock solutions and used at final concentrations of 45, 40, and 6 µM, respectively.
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5

Immunoblotting and Immunofluorescence Antibody Panel

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For immunoblotting (IB) and immunofluorescence (IF) experiments the following antibodies were used: rabbit polyclonal anti-LC3B (7543, Sigma, IB dilution 1:1000, IF dilution: 1:200), rabbit polyclonal anti-Actin (A2066, Sigma, IB dilution 1:2000) and mouse monoclonal anti-Tubulin (T5168, Sigma, IB dilution 1:5000), mouse monoclonal anti-p62/SQSTM1 (#610833, Sigma, IB dilution 1:2000), mouse monoclonal antibody anti-LPS from Salmonella (5D12A, Bio-rad, IF dilution: 1:500). Trans-resveratrol, DAPI and gentamicin were purchased from Sigma. Bafilomycin A1, Wortmannin and Rapamycin were purchased from LC laboratories.
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6

Monitoring cAMP-mediated Signaling Pathways

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To monitor the cAMP-mediated signal transduction pathway, CRE-GFP 293 cells in 6-well plates (1 × 106/well) were pretreated with kinase inhibitor H-89 (LC Laboratories, Woburn, MA, USA), KN-62 (Cayman Chemical, Ann Arbor, MI, USA), U0126 (LC Laboratories), or wortmannin (LC Laboratories) (10 μM) for 4 h before forskolin or LM-021 (10 μM) addition for 5 h. GFP fluorescence/protein and total/phosphorylated PKA, CaMKII, ERK, PI3K, and CREB levels were examined. In addition, Aβ-GFP or ∆K280 tauRD-DsRed SH-SY5Y cells were treated with retinoic acid (10 μM) on day 1, followed by the addition of LM-021 (5 or 10 μM) and doxycycline (5 or 2 μg/ml) on day 2, as described. Kinase inhibitors (10 μM) were added on day 6. On day 8, the cells were collected for protein expression analysis of BDNF, BCL2 (BCL2 apoptosis regulator), and BAX (BCL2 associated X, apoptosis regulator), and total/phosphorylated PKA, CaMKII, ERK, PI3K, and CREB. Also, cells were stained with DAPI and assessed for neurite outgrowth as described above.
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7

Cell Signaling Inhibitor Assay

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Roscovitine (Calbiochem) and wortmannin (LC Laboratories; Woburn, MA) were dissolved in DMSO at 20 mM as a stock solution, and used at a final concentration of 30 μM and 40 μM, respectively.
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8

Efficient Fucoxanthin Extraction from Sargassum

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Fucoxanthin was extracted from Sargussum horneri using a series of steps, including solvent extraction, ethanol precipitation and low-temperature concentration. Briefly, fucoxanthin isolation was conducted at 30°C for 2 h with ethanol to sample ratio of 4:1 (v/w). Then the fucoxanthin-containing solution was concentrated at 25°C. Lipid and chlorophylls were precipitated when the ethanol content reached 63% in the concentrated solution. Fucoxanthin was purified by precipitation when the ethanol content reached 40% in the solution. The purity of fucoxanthin was more than 90% by HPLC, and purified fucoxanthin was stored at −20°C prior to further analysis. H2O2 was purchased from Calbiochem (San Diego, CA, USA). SB415286 was purchased from Sigma Chemicals (St Louis, MO, USA). U0126, Wortmannin and LY294002 were supplied from LC Laboratories (Woburn, MA, USA). Antibodies against pSer473-Akt, Akt, pSer9-GSK3β, GSK3β, pERK and ERK were provided by Cell Signaling Technology (Beverly, MA, USA). Unless otherwise noted, all media and supplements for cell cultures were obtained from Invitrogen (Carlsbad, CA, USA).
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9

Wortmannin Inhibits Diabetic Rat Model

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All animal procedures were performed according to the guidelines provided by the Committee of Animal Ethics at Korea University. Fifteen healthy male 4-week-old Sprague Dawley rats (Orient, Technical Corporation of Charles River Technology, Gapyoung, Korea) weighing 150±10 g were randomly divided into 3 groups: the control, diabetic and wortmannin-treated diabetic groups (n=5 for each group). Before the experiments, the rats were allowed 1 week to adapt to the laboratory conditions. The rats were maintained under standard conditions with a 12 h/12 h light/dark cycle at 23±1 °C and 50±10% humidity. All animals had free access to water. All animals in the diabetic and wortmannin-treated diabetic groups were intraperitoneally injected with 65 mg kg−1 body weight streptozotocin (STZ; Sigma-Aldrich, St Louis, MO, USA) dissolved in pH 4.5 sodium citrate buffer. Control rats were injected with an equivalent volume of sodium citrate buffer. At 3 days after STZ injection, the animals were considered to be diabetic if the plasma glucose levels were ⩾300 mg dl−1.23 (link) wortmannin (1 mg kg−1, LC Laboratories) was dissolved in dimethyl sulfoxide and intraperitoneally injected every day for 8 weeks. The control and diabetic group rats were injected with an equivalent volume of dimethyl sulfoxide. All rats were killed after 8 weeks.17 (link)
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10

TRPM3, TRPM8, and Phosphoinositide Modulation

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The TRPM3 agonist PregS and TRPM8 agonist menthol were purchased from Sigma-Aldrich. ATP was purchased from Roche. The nonhydrolyzable ATP analogue adenosine-5-[(β,γ)-methyleno]triphosphate (AMPPCP) was obtained from Jena Bioscience and adenosine-5-[(β,γ)-imido]triphosphate (AMPPNP) was purchased from Sigma-Aldrich. Water-soluble diC8 PIPs and diC16 PI(4,5)P2 were purchased from Echelon, IP3 was obtained from Sigma-Aldrich, and brain-derived natural PI(4,5)P2 was obtained from Avanti. Stock solutions of PIPs were reconstituted in H2O and stored at −80°C, and they were intensively sonicated before use. Estimated mole fractions in the inner leaflet of the membrane for diC8- PI(4,5)P2 and diC8- PI(4)P were calculated based on the polynomial functions provided in Collins and Gordon (2013) (link), which provide a relationship between PIP concentrations in solution and their distribution in artificial liposomes. To scavenge PIPs, poly-L-lysine (PLL) and neomycin were used (both from Sigma-Aldrich). The phosphatidylinositol-3 kinase (PI-3K) inhibitors wortmannin and LY294,002, as well as rapamycin were from LC Laboratories. The mAChR receptors were activated by oxotremorine-M (N,N,N-trimethyl-4-(2-oxo-1-pyrolidinyl)-2-butyn-1-ammonium iodide; Oxo-M) from BioTrend Chemicals.
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