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2 protocols using anti dykddddk tag mab

1

Western Blot Analysis of Protein Expression

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Transfected cells were prepared in Laemmli buffer (Bio-Rad Laboratories) containing 2.5% 2-mercaptoethanol (2-ME). Proteins were separated on either 10% or 12% SDS–PAGE gels and transferred onto Immobilon-P membranes (Merck Millipore). The membranes were first probed with the appropriate primary antibodies. An anti-HIS tag monoclonal antibody (mAb), anti-HA tag mAb (both at a 1:2.5 × 103 dilution) (Medical & Biological Laboratories Co.), anti-DYKDDDDK tag mAb (1:2 × 103 dilution; for detecting the FLAG tag) (Fujifilm Wako Pure Chemical Co.), and anti-ß-tubulin antibody (1:103 dilution; as the loading control) (Abcam) were used. The membranes were subsequently incubated with goat horseradish peroxidase (HRP)-conjugated anti-mouse IgG or anti-rabbit IgG (both 1:2 × 104 dilution; Thermo Fisher Scientific) as secondary antibodies. Proteins were visualized by enhanced chemiluminescence using SuperSignal West Dura substrate (Thermo Fisher Scientific) with an ImageQuant LAS 4000 system (GE Healthcare Life Sciences).
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2

Signaling Pathway Activation Detection

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Anti-MyD88 Ab, anti-phospho IRAK4 Ab, anti-IRAK4 mAb, anti-phospho p65 Ab, anti-phospho ULK1 mAb, anti-ULK1 mAb, anti-phospho AMPKα mAb, anti-AMPKα mAb, anti-LC3B mAb and horseradish peroxidase (HRP)-conjugated Rabbit IgG were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-DYKDDDDK tag mAb, anti-tag antibody magnetic beads, DYKDDDDK peptide, coomassie G-250, compound C and HRP-conjugated anti-β-actin Ab were obtained from WAKO Pure Chemical Industries (Osaka, Japan). Lipopolysaccharide (LPS, Salmonella enterica serotype typhimurium) was purchased from Sigma Aldrich (St. Louis, MO, USA). Pam3CSK4, FLA-ST standard, FSL-1, ssRNA40/LyoVec and poly (I:C) HMW were obtained from InvivoGen (San Diego, CA, USA). Halt protease & phosphatase inhibitor single-use cocktail was purchased from Thermo Scientific. RIPA lysis buffer was obtained from Merck Millipore (Billerica, MA, USA). 3-methyladenine was purchased from Santa cruz Biotechnology (Dallas, TX, USA).
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