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10 protocols using d9 tmao

1

Quantification of Plasma TMAO by LC-MS/MS

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Quantification of TMAO in plasma samples was performed as described previously61 (link). Briefly, for the sample extraction, 25 µL of plasma was mixed with 80 µL of methanol with labelled IS working solution (TMAO-d9; Cambridge Isotope Laboratories, Massachusetts, USA) and mixed 30 seconds to precipitate proteins. The samples were subjected to centrifugation at 9000 rpm for 5 min at room temperature, and the supernatants were diluted with 150 uL of MilliQ water. Diluted samples were filtered with PVDF filters 0.22 µm and transferred into HPLC vials for analysis. The analysis was performed by liquid chromatography coupled to tandem mass spectrometry (UPLC-MS/MS) (Waters, Milford, MA, USA) using a column Acquity UPLC BEH HILIC (1,7 µm 2,1 × 100 mm).
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2

LC-MS/MS Quantification of Choline, Betaine, and TMAO

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We utilized LC-MS/MS to quantify choline and betaine as previously described [44 (link)] with modifications to include measurements of TMAO. Briefly, 100 µL of 0.1% formic acid in acetonitrile and 5 µL of internal standard mix were added to 50 µL of plasma. Internal standard mix contained choline D13 (CDN Isotopes, Pointe-Claire, QC, Canada), betaine D3 (CDN Isotopes), TMAO D9 (Cambridge Isotopes, Tewksbury, MA, USA). After vortexing and centrifugation, 5µL of clear supernatant was injected into a Syncronis Silica 150 × 2.1, 5u with matching guard column (Thermo Scientific, Waltham, MA, USA). Metabolites were separated under isocratic conditions using 19% of 15 mM ammonium formate with 0.1% formic acid and 81% acetonitrile with flow of 0.5 mL/min. Calibration curves were generated by serial dilutions of unlabeled metabolites in water with the addition of a comparable amount of internal standard mix (i.e., same concentrations as samples). Positive ion SRM transitions were m/z 76 to 58 and m/z 85 to 66 for TMAO and TMAO D9, respectively. L-carnitine was quantified using a commercial colorimetric kit (Sigma-Aldrich, St. Louis, MO, USA).
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3

Quantitative Analysis of Metabolites

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The standard stock solutions of 5-PAHSA, 9-PAHSA, 12-PAHSA, 9-PAHPA, 9-SAHSA, 9-POHSA, 9-OAHSA, PA, SA, POA, and OA were purchased from Cayman Chemical (Ann Arbor, MI, USA). The standards of l-Hcy, SAH, l-Car, and TMAO (Sigma Aldrich, St. Louis, MO, USA) were dissolved in double-distilled water (ddH2O) or HPLC grade methanol (MeOH) with final concentration 0.1 mg/mL for stock solution. The stable isotopes 13C16-palmitic acid (13C16-PA) and d3, l-methionine (d3-l-Met) were obtained from Sigma Aldrich (St. Louis, MO, USA), and the d9-TMAO was purchased from Cambridge Isotope Laboratories (Andover, MA, USA). All of the stock solutions and stable isotopes solution were stored at −20 °C and the storage time was less than one year. The calibration curves were prepared by using stock dilution and formulated by using the peak area ratio of the analytical standards and the internal standards.
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4

Comprehensive TMAO Metabolism Analysis

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TMAO (Sigma, Cat. 317594), D9-TMAO(Cambridge Isotopes,Cat. DML-4779-1), [6]-gingerol (Sigma, Cat. 345868), CDN1163 (Sigma, Cat. SML1682), MCC950 sodium (MCE, Cat. HY-12815A), Glucose (Sinopharm Chemical Reagent Co., Ltd. Cat. 10010592), GLP-1 (7-36) (MCE, Cat. HY-P0054), L-Arginine monohydrochloride (Sigma, Cat. A5131), Fatty acid free bovine serum albumin (Equitech-Bio, Inc.Cat. BAH66), Collagenase from Clostridium histolytium (Sigma, Cat. C9263), Human recombinant insulin (Lilly Cat. HI0219), Fura-2, AM (Invitrogen, Cat. F1221), mitoSOX Red, Molecular Probes (Invitrogen, M36008), phosphoenolpyruvate (Sigma, Cat. P7127), ATP disodium salt (Sigma, Cat. A3377), pyruvate kinase (Sigma, P1903-1KU), lactate dehydrogenase (Sigma, Cat. 59747), NADH (Sigma, Cat. N8129), digitonin (Sigma, Cat. D141), protease inhibitor cocktail (Sigma, Cat. P8340), PMSF (Roche, Cat. 10837091001), 4-Bromo A23187 (MCE, Cat. HY-N6694), Anti-Biotin MicroBeads (Miltenyi Biotec, Cat. 130-090-485).
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5

Gut Microbial Suppression and Betaine Studies

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All animal studies were performed under approval of the Animal Research Committee of the Cleveland Clinic. Mouse plasma total cholesterol and triglycerides were measured using the Abbott ARCHITECT platform model ci8200 (Abbott Diagnostics, Abbott Park, IL). HDL cholesterol concentration, liver triglyceride and cholesterol contents were quantified as previously described (Wang et al., 2011 (link)). Gut microbial suppression studies were performed by dissolving antibiotics in drinking water (Wang et al., 2011 (link)). D3(methyl)-betaine and d9(trimethyl)-betaine, were purchased from C/D/N Isotopes Inc. (Pointe-Claire, Quebec, Canada), and d9-TMA and d9-TMAO were purchased from Cambridge Isotope Laboratories (Andover, MA).
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6

Metabolite Quantification by HPLC

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Solvents and reagents (HPLC grade acetonitrile, water, sodium hydroxide, and formic acid 99%) used for sample preparation and as mobile phases were purchased from Fisher Scientific and used without further purification. Sodium citrate, sodium lactate, glucose, sorbitol, uric acid, creatinine, sodium succinate, TMAO, hippuric acid, and oxoglutarate reference materials were from Sigma Aldrich. The internal standards, d-4 succinate, d-5 hippurate, d-3 creatinine, d-6 glucose, and d-9 TMAO were purchased from Cambridge Isotopes.
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7

Plasma Choline Metabolite Profiling

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Fasting blood samples were drawn within 24 hours of patients' hospital admission. Plasma samples were separated at clinical laboratories of each participating hospital and immediately frozen at -80 °C. Choline pathway nutrients and metabolites were quantified on an Ultimate 3000 ultra-high performance liquid chromatograph coupled with Q Exactive quadrupole-Orbitrap high-resolution mass spectrometer system (Thermo Scientific) using d9-choline, d11-betaine, and d9-TMAO as internal standards (Cambridge Isotope Laboratories, Inc, Andover). The metabolites were chromatographically resolved on an Acquity HILIC amide column (Waters, Co; 1.7 μm, 2.1×100 mm) after 2 μL aliquots of metabolites extract injected, and 10% water in acetonitrile as weak eluent and 50% acetonitrile in water as strong eluent which were both added ammonium formate and formic acid as buffer salt to improve separation. The chromatographic gradient ramped from 100% weak elution to 30% in 9 minutes; meanwhile, the flow rate was set at 0.3 mL/min. After separation, the metabolites were ionized by a heated electrospray ionization source and then detected by parallel reaction monitoring mode. The main parameters were optimized as follows: positive
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8

Quantification of TMAO and L-carnitine

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Levels of serum TMAO and L-carnitine were detected by liquid chromatography with tandem mass spectrometry (LC/MS/MS). Detailed methods were described in our previous publication (26 (link)). Briefly, protein-free serum enriched with d9-TMAO and d11-L-carnitine (Cambridge Isotopes, Tewksbury, MA, USA) was injected into a normal-phase Atlantis HILIC Silica HPLC column (3 μM, 2.1 × 100 mm, Waters Corporation, Milford, MA). TMAO and L-carnitine were eluted in an isocratic solvent system consisting of 25% ammonium formate (15 mM, pH 3.0) and 75% acetonitrile and delivered to the tandem Micromass Ultima Triple-Quad mass spectrometer (Waters Corporation, Milford, MA). The m/z transitions during mass spectrometry were: d9-TMAO 85>68, TMAO 76>58, d11-L-carnitine 171.1>103, L-carnitine 162>103.
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9

TMAO Quantification by LC-MS

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All solvents (water, methanol, and acetonitrile) were of LC-MS grade and purchased from Fisher Scientific (Loughborough, UK) or VWR International (Lutterworth, UK). TMAO (98.9% purity) was purchased from Merck (Gillingham, UK) and D9-TMAO (>98% purity, 99.9% enrichment) from Cambridge Isotopes (Tewksbury, MA, USA). Formic acid and ammonium hydroxide were purchased from Fisher Scientific.
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10

Quantification of l-Carnitine and TMAO in Mice

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Plasma levels of l-carnitine and trimethylamine N-oxide (TMAO) in mice were analyzed using liquid chromatography-mass spectrometry (LC-MS) as previously described by Koeth et al., 2013 [8] 8. Koeth, R.A. . In brief, 50 μL of the mouse plasma samples were pipetted into a 2 mL centrifuge tube, where 50 μL of HPLC grade acetonitrile and 100 μL of internal standard solution were then added. All samples were targeted to contain 1 μg/mL synthetic d9 -l-carnitine hydrochloride (Sigma Aldrich) and 0.1 μg/mL d9-TMAO (Cambridge Isotope Laboratories, Tewksbury, MA). The mixture was vortexed for 2 min, followed by centrifugation. The upper supernatant was taken for HPLC-MS/MS analysis, using an Agilent 1200 HPLC and 6410 triple quadrupole MS system. The elution was carried out on a Phenomenex Synergi 4 μm Polar-RP column (150 × 4.6 mm, 4 μm, part No. 00F-4336-E0). All analyses was performed at a column temperature of 30 ± 1 °C with a mobile phase of 10 mM ammonium formate and methanol. Detection and quantification of l-carnitine and TMAO levels (ppm) was achieved by ESI-MS/MS operating in the positive ion mode and the developed method was validated as per the requirements for the ICH guidelines.
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