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23 protocols using anti cd45 pe cy7

1

Flow Cytometry Analysis of SVF Cells

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Flow cytometry was used to identify the proportions of the different cell types contained in the SVF, as previously described [14 (link)]. Cells (350000) were stained with anti-CD3 FITC (T cells; BD; #559975), anti-CD11b FITC (myeloid cells; BD; #561684), anti-CD45 PE/Cy7 (peripheral leukocytes; BD; #561588), anti-rat macrophage subset PE (BD; #554901), or anti-rat granulocytes FITC (BD; #554907) 30 min prior to analysis. Primary anti-CD36 (Abcam; #ab23680), secondary goat anti-mouse IgG (H + L) Alexa Fluor 594 (Thermo Fisher; #A-11005), and anti-CD45 PE/Cy7 (BD; #561588) antibodies were used to identify adipocytes. Primary anti-CD34 (R&D Systems; #AF6518-SP), secondary donkey anti-sheep IgG (H + L) PerCP (R&D Systems; #F0128), and anti-CD31 PE (BD; #555027) antibodies were used to identify lymphohematopoietic cells, endothelial cells, smooth muscle cells, and adipose-derived stem cells. Samples were run on a BD LSR II Flow Cytometer (BD). Ten thousand events were collected, and data was analyzed using the FACSDiva software (BD).
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2

Immunophenotyping of Tumor-Infiltrating Lymphocytes

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Tumor cells obtained from control or treated mice were thawed, centrifuged, and stained in one-step test using monoclonal antibodies conjugated with fluorophores: anti-CD45 PE-Cy7, anti-CD4 APC, anti-CD8 FITC, and anti-CD49b PE (all from BD Biosciences). In order to eliminate dead cells during the analysis, cells were additionally stained with DAPI dye (Molecular Probes). The analysis was carried out using LSR Fortesssa with Diva software (Becton Dickinson). In order to determine the percentage of T regulatory lymphocytes in tumors, the cells were stained with monoclonal antibodies: anti-CD45 PE-Cy7 (BD Biosciences), anti-CD4 FITC (eBioscience), and anti-CD25 PE (eBioscience). Then, cells were fixed using Foxp3/Transcription Factor Staining Buffer Set (eBioscience) according to manufacturer instruction and incubated with anti-FoxP3 monoclonal antibody conjugated with APC (eBioscience). The analysis was carried out using LSR Fortessa with Diva software (Becton Dickinson).
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3

Characterizing MICA, NKG2D, and DNAM-1 expression in multiple myeloma

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Analysis of MICA expression on patient-derived PCs was performed by gating the CD38+CD138+ PC population using the antibodies anti-MICA (clone 159227, R&D Systems, Minneapolis, MN, USA), anti-CD38/APC, and anti-CD138/FITC (both from BD Bioscience, San Jose, CA, USA) as previously reported (16 (link)); samples were acquired using a FACSCanto (BD Biosciences, San Jose, CA, USA) and a FACSCalibur (Becton Dickinson). Analysis of NKG2D and DNAM-1 on NK cells from PBMCs or BM aspirates was performed by gating on the CD45+CD138CD3CD56+ population using the antibodies anti-CD3/allophycocyanin-H7, anti-CD56/PE, anti-CD138/FITC, anti-CD45/PE-Cy7, anti-NKG2D/APC, or anti-DNAM-1/APC (BD Bioscience). In some experiments, anti-CD16/PerCP mAb was also used (BD Bioscience). In the experiments relative to Figure 4 and Figure S2 in Supplementary Material, all the patients-derived samples were acquired using a FACSCanto (BD Biosciences, San Jose, CA, USA). In the experiments relative to Figure 5, PBMCs derived from healthy donors were incubated with medium alone or serum derived from MGUS or MM patients for 16 h. After harvesting, cells were stained with antibodies from BD Bioscience: anti-CD3/PerCP, anti-CD56/APC, and anti-NKG2D/PE; samples were acquired using a FACSCalibur (Becton Dickinson).
Data analysis was performed using the FlowJo 9.3.2 program (TreeStar, Ashland, OR, USA).
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4

Cardiac Cell Isolation and Characterization

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Twenty-four hours after reperfusion, hearts were harvested, cut into small pieces, and digested with a cocktail of 450 U/mL collagenase type I, 125 U/mL collagenase type XI, 60 U/mL DNase I, and 60 U/mL hyaluronidase (Sigma–Aldrich) in PBS containing 20 mM 4-(2-hydroxyethyl)piperazine-1-ethanesulfonic acid (HEPES) at 37 °C for 40 min. The cell suspensions were washed with PBS, and Fc receptors were blocked with anti-CD16/32 antibodies (BD Pharmingen). After blocking, the cell suspensions were incubated with a cocktail of antibodies against leukocytes (anti-CD45-PE-Cy7, 30-F11), myeloid cells (anti-CD11b-APC-Cy7, M1/70), B cells (anti-B220-PE, RA3-6B2), T cells (anti-CD90.2-PE, 53-2.1), NK cells (anti-CD49b-PE, DX5; NK1.1-PE, PK136), granulocytes (anti-Ly-6G-PE, 1A8), monocyte subsets (anti-Ly-6C-FITC, AL-21), and macrophages (anti-F4/80-Alexa Fluor 647, T45-2342) (BD Pharmingen) for 1 h at 4 °C. 7-AAD (BD Pharmingen) was applied to exclude nonviable cells just before starting the analysis. The stained cells were analyzed with a Gallios flow cytometer (Beckman Coulter Inc., CA). Monocytes/macrophages were identified as CD45 + CD11b + Lineage (B220/CD90.2/CD49b/NK1.1/Ly-6G)- Ly-6Chigh/low cells.
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5

Mesenchymal Stem Cell Phenotyping

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BMMSCs were detached from the culture flasks using Accutase™ solution (EMD Millipore). Cells were washed twice with PBS, non-specific antigens were blocked with 5% goat serum (Beijing Biosynthesis Biotechnology Co., Ltd.) for 1 h at room temperature, and then incubated with anti-CD14-FITC (cat. no. 561712; BD Pharmingen; BD Biosciences), anti-CD34-FITC (cat. no. 560942; BD Pharmingen; BD Biosciences), anti-CD90-APC (cat. no. 561971; BD Pharmingen; BD Biosciences), anti-CD105-PE (cat. no. 560839; BD Pharmingen; BD Biosciences) and anti-CD45-PE-Cy7 (cat. no. 560915; BD Pharmingen; BD Biosciences) antibodies for 15 min at 4°C according to the manufacturer's instructions. Mouse IgG1K (cat. no. 562438; BD Pharmingen; BD Biosciences; 1:500) was incubated with cells at 4°C as an isotype control. Cells were analyzed via flow cytometry (Gallios; Beckman Coulter, Inc.) and the FlowJo software program (FlowJo7.6; FlowJo LLC).
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6

Cytotoxicity Assay for Multiple Myeloma

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As the source of effector cells, we used both PBMCs and BM samples derived from MM patients at different state disease and PBMCs from healthy donors. K562 were used as target cells that were co-incubated with effector cells in complete medium at 2.5:1 effector/target (E/T) ratio for 2 h at 37 °C and 5% CO2 [11 (link)]. In some experiments, different human cell lines such as SKO-007(J3), ARK and ARP and primary malignant plasma cells were used as targets. Thereafter, cells were washed with PBS/2% FCS and stained with the lysosomal marker CD107a/APC (BD Biosciences, San Jose, CA) and anti-CD3/APC-H7, anti-CD56/PE, anti-CD45/PE-Cy7, anti-CD16/PerCP for 45 min at 4 °C. All the samples were acquired using a FACSCanto II (BD Biosciences, San Jose, CA) and data analysis was performed using the FlowJo 9.3.2 program (TreeStar, Ashland, OR, USA).
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7

Isolation and Characterization of Immune Cells from Mouse Spinal Cord

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The spinal cord, dissected from mice transcardially perfused with PBS, was minced into 1 mm3 pieces in solution containing 1 mg/mL or 0.1 mg/mL collagenase IV (Worthington Biochemical Corporation, USA) plus 0.4 mg/mL DNase I (Roche, Switzerland), and incubated at 37 °C for 15 min. For isolation of immune cells and microglia, cells were resuspended in 37% Percoll (GE Healthcare, USA) and centrifuged at 780 × g for 20 min. After centrifugation, myelin debris was removed and the cell pellet was collected. Cells were incubated with anti-CD16/CD32 antibodies (eBioscience, USA) for blocking Fc receptors, and then stained with combinations of the following antibodies: anti-CD45-PE-Cy7, anti-CD45-APC-Cy7, anti-CD4-PE, anti-CD8a-FITC, anti-CD8a-APC-Cy7, anti-NK1.1-PErCP-Cy5.5, anti-NK1.1-PE, anti-CD11c-PE, anti-CD11b-APC-Cy7, anti-CD11b-PerCP-Cy5.5 (BD Biosciences, USA), anti-CD4-APC, anti-CD3e-PerCP-Cy5.5, anti-CD86-APC, anti-CD25-PE (eBioscience, USA), anti-CD11c-APC, anti-I-A/I-E (MHC class II)-FITC, anti-CD4-PE-Cy7, anti-CD4-APC, anti-CD68-PE, anti-H-2Kb/H-2Db (MHC class I)-PE, anti-CD206-PE, anti-CD178 (FasL)-PE, and Armenian Hamster IgG Isotype control-PE (BioLegend, USA). Flow cytometry was performed by using FACS Aria and FACS Verse flow cytometers (BD Biosciences, USA) and the data was further analyzed using FlowJo Software (FlowJo, LLC, USA).
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8

Isolation and Characterization of Mouse Mammary Epithelial Subpopulations

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Primary mouse mammary gland cells were used as controls for flow cytometry and were isolated using mechanical and enzymatic disaggregation as described previously [37 (link)]. The epithelial subpopulations were isolated from the disaggregated samples by flow cytometry as detailed previously [18 (link),19 (link),38 (link)]. Hematopoietic lineage cells were stained with anti-CD45-PE-Cy7, anti-TER119-PE-Cy7 and anti-CD31-PE-Cy7 (BD Biosciences, Franklin Lakes, NJ, USA). Cells were simultaneously stained with mammary-specific lineage markers, anti-Epcam BV421(BD Biosciences), anti-CD49f-APC (Biolegend, San Diego, CA, USA), anti-Sca-1-PE (BD Biosciences), anti-CD49b-FITC (Biolegend, San Diego, CA, USA) and propidium iodide (Sigma). Cells were analysed on a Fortessa-X20 flow cytometer (Becton Dickinson, Franklin Lakes, NJ, USA). Linear density contour plots were used to describe flow cytometry gates. Fluorescence-minus-one control gates defined marker-negative populations.
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9

Flow Cytometry Analysis of Cultured CPC

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Flow cytometry analyses of cultured CPC were performed with a BD LSRII flow cytometer. Briefly, CPC cells were blocked with 5% rat serum and stained with a panel of conjugated antibodies, including anti-Sca-1-PE, anti-CD31-biotin,, anti-c-kit-biotin, anti-CD45-PE-cy7, anti-Flk1-PerCP-cy5.5 and anti-CD105-V450 (BD Biosciences, San Jose, CA), or isotype-matched control antibodies. Anti-c-kit-biotin, and anti-CD31-biotin antibodies were resolved via secondary staining with streptavidin-PerCP-Cy5.5 or streptavidin-FITC, respectively.
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10

Mesenchymal Stem Cell Immunophenotyping

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The presence of expression markers was assessed by flow cytometry. MSCs were harvested by trypsinisation and labelled with the following antibodies: anti‐CD105‐PE (Southern Biotech; 9811‐09), anti‐CD11b‐PE (BD bioscience; 555388), anti‐CD14‐PE/Cy7 (Biolegend; 301814), anti CD34‐PE (BD bioscience; 345802), anti‐CD45‐PE/Cy7 (BD bioscience; 557748), anti‐CD73‐PE (BD bioscience; 550257), and anti‐CD90‐PE/Cy7 (BD bioscience; 561558). As isotype controls for PE/Cy7 (BD bioscience; 557872) and PE (Beckman Coulter; PN‐AO7796) were used. Cells were labelled in the presence of FcR‐Blocking reagent (Miltenyi Biotec) for 30 minutes at 4°C after which cells were washed twice with FACS‐buffer (PBS, 5% FCS, 0.1% sodium azide). Flow‐cytometric analysis (≥104 events acquired) was performed using a Becton Dickinson FACSCanto II as described (Besseling et al., 2021 (link)).
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