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36 protocols using xfect reagent

1

Transfecting NIH/3T3 Cells for Analysis

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NIH/3T3 cells were obtained from ATCC (CRL-1658TM) and maintained in Dulbecco’s Modified Eagle’s Medium (DMEM (Life Technologies)) plus 10% calf serum. 60% confluent cultures were transfected using XfectTM reagent (Clontech) as per manufacturer’s protocol and cultured for 48 hours before lysis or fixation.
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2

Establishment of NPM1 Mutant Cell Lines

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The pEGFPC1-NPM1mA and empty pEGFPC1 vectors were kindly provided by Dr. B Falini (Institute of Hematology, University of Perugia, Perugia, Italy). THP-1 cells were transfected with either pEGFPC1-NPM1 mA or empty pEGFPC1 vector using xfectTM reagent (Clontech, BD, USA), they were named as the “NPM1mA” or “pEGFPC1” group respectively. The “Blank” group represented THP-1 cells without transfection. Stable cell lines were selected and maintained in G418 (Invitrogen, MD, USA). Numerous independent single colonies were subcloned and analyzed for mRNA expression with RT-PCR and for protein expression with immunocytochemistry staining.
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3

Transfecting NIH/3T3 Cells for Analysis

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NIH/3T3 cells were obtained from ATCC (CRL-1658TM) and maintained in Dulbecco’s Modified Eagle’s Medium (DMEM (Life Technologies)) plus 10% calf serum. 60% confluent cultures were transfected using XfectTM reagent (Clontech) as per manufacturer’s protocol and cultured for 48 hours before lysis or fixation.
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4

NPM1 Mutant and Wild-Type Overexpression

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pEGFPC1-NPM1-mA, pEGFPC1-NPM1-wt and empty pEGFPC1 were kindly provided by Dr. Falini B (Institute of Hematology, University of Perugia, Perugia, Italy). THP-1 cells were transfected with either pEGFPC1-NPM1-mA, pEGFPC1-NPM1-wt or pEGFPC1 vector using the xfectTM reagent (Clontech, USA) according to the manufacturer's instructions, and they were named the “NPM1-mA”, “NPM1-wt” and “pEGFPC1” groups. The “untreated” group represented THP-1 cells without transfection. Stable cell lines were selected and maintained in G418 (Invitrogen, MD, USA). Numerous independent single colonies were subcloned and analyzed for mRNA expression with RT-PCR and for protein expression with immunocytochemistry staining.
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5

Cell culture and transfection protocol

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HeLa (human epithelial; ECACC no. 93021013) and HEK293T (human embryonic kidney SV40 transformed; ECACC no. 12022001) cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal calf serum. 2 mM L-glutamine, 100 U/ml penicillin and 100 μg/mL streptomycin were included in the culture media. All cells were maintained in a 5% CO2 humidified atmosphere at 37 °C. For cell lysis, 2 × 107 to 108 cells per ml were incubated at 4 °C in NP40 buffer (10 mM Tris-HCl pH 7.4, 150 mM NaCl, 10% glycerol, 1% NP40, 1% aprotinin, 1 mM phenylmethylsulfonyl fluoride (PMSF), 1 μg/mL pepstatin, and 1 μg/mL leupeptin) for 20 min. The extract was centrifuged at 20000 g for 20 min, and the supernatant was stored at −80 °C. For transient transfection assays, 2–5 × 106 HeLa cells/assay were resuspended in 200 μL of 15 mM HEPES-buffered serum-containing medium, mixed with 50 μL 210 mM NaCl containing 5–10 μg plasmid DNA and electroporated using a BTX Electrocell Manipulator 600 set at 240 V, 720 Ω, 950 μF. Cells were processed 24 h after electroporation. HEK293T cells were lipotransfected using the Xfect reagent (Takara Bio, Kusatsu, Japan) according to the manufacturer’s instructions and processed 48 h after transfection.
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6

Recombinant C1-INH Variant Production

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The SERPING1 expression pcDNA3.1 vector (GeneScript, Piscataway, NJ) was used to construct the C1-INH variants. The variants were produced using the QuikChange XL site-directed mutagenesis kit (Agilent Technologies, Santa Clara, Calif). Each SERPING1 cDNA clone was sequenced. The variants were transfected into human embryonic kidney 293T cells where Dulbecco modified Eagle medium was replaced with OptiMEM (Invitrogen, Grand Island, NY). Transient transfections were performed using the Xfect reagent (Takara Bio, Mountain View, Calif). Supernatants were collected after 48 hours, centrifuged to remove debris, concentrated 40 ×, and stored in aliquots at −80 ° C.21 (link)
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7

Generation of Stable Carboxylesterase-Expressing ASCs

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The genes encoding human carboxylesterase-2 (hCE2) and NanoLuciferase (NanoLuc®, Promega, Madison, WI) were designed and then synthesized by VectorBuilder Inc. (Santa Clara, CA USA) for mammalian cell expression using PiggyBac transposon system The secretory form of human carboxylesterase-2 (shCE2) was generated by removing the ER retention signal (HTEL) from the non-secretory form (hCE2). This signal is encoded as 12 nucleotides (4 amino acids) located at the peptide’s C-terminal. The ASCs were seeded in 6-well plates at the density of 3 × 105 cells/well and then co-transfected with the constructed transposon plasmid vectors along with helper plasmid encoding hyperactive PiggyBac transposase system by using XFECT™ reagent (Takara Bio, Inc., CA, USA) following the manufacturer’s protocol. Transfected ASCs were maintained in full media supplemented with 400 μg/ml Hygromycin B (Clontech, CA USA) for 3–4 weeks to obtain the stable clones expressing carboxylesterase and NanoLuciferase. The stable clones ASC-shCE2:nLuc (secretory) and ASC-hCE2:nLuc (non-secretory) were generated, expanded and stored under liquid nitrogen for further use.
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8

Recombinant C1-INH Variant Production

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The SERPING1 expression pcDNA3.1 vector (GeneScript, Piscataway, NJ) was used to construct the C1-INH variants. The variants were produced using the QuikChange XL site-directed mutagenesis kit (Agilent Technologies, Santa Clara, Calif). Each SERPING1 cDNA clone was sequenced. The variants were transfected into human embryonic kidney 293T cells where Dulbecco modified Eagle medium was replaced with OptiMEM (Invitrogen, Grand Island, NY). Transient transfections were performed using the Xfect reagent (Takara Bio, Mountain View, Calif). Supernatants were collected after 48 hours, centrifuged to remove debris, concentrated 40 ×, and stored in aliquots at −80 ° C.21 (link)
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9

Generating FH Variants by Site-Directed Mutagenesis

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The FH variants (Figures 1B–D) were produced using the QuikChange XL site-directed mutagenesis kit (Agilent Technologies, Santa Clara, CA). Each CFH cDNA clone was sequenced. The variants were transfected into human embryonic kidney 293T cells and DMEM was replaced with serum-free OptiMEM® (Invitrogen, NY). Transient transfections were performed using the Xfect reagent (Takara Bio USA, Mountain View, CA). Supernatants were collected after 72 h, concentrated 80×, and stored in aliquots at −80°C (9 (link)).
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10

Luciferase Assay for Th Promoter

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The 963-bp 5′-flanking region of mouse Th was subcloned into pGL4.19-basic vector (Promega, Madison, WI, USA) using 5′-TTTGGTACCGTTTCCTTGGCTGAGGAAGCT-3′ and 5′-AACAAAGCTTAGTGCAAGCTGGTGGTCCCG-3′. A deletion construct of CRE was generated by deletion of the central four nucleotides (−45: TGACGTCA—> TGCA), as previously described48 (link),49 (link) using the KOD mutagenesis kit (Toyobo). Constructs were confirmed by direct sequencing (ABI 3100; Applied Biosystems).
The HEK293T cells were plated in 96-well plates at a density of ~ 2 × 106 (link) cells per well in 125 µl DMEM. Th promoter-luciferase construct (133 ng) was co-transfected with Renilla luciferase (19 ng) using Xfect reagent (Takara Bio, Kusatsu, Japan). After 24 h, cells were washed with DMEM, and 75 µl of DMEM was added to each well. Modafinil (0.1 mM, dissolved in 0.1% DMSO/DMEM) was added into wells 12 h after washing50 (link). Sixteen hours later, luciferase activities were measured using the Dual-Glo luciferase assay (E2920; Promega) with SoftMax Pro (Molecular Devices, San Jose, CA, USA). Firefly relative luciferase activity was normalized against Renilla activity.
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