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13 protocols using dulbecco s modified eagle s medium dmem

1

Amyloid-beta Precursor Protein Assay

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BACE1 (human recombinant β-secretase) (EC 3.1.1.8) and the BACE1 FRET (fluorescence resonance energy transfer) assay kit Red were purchased from ThermoFisher Scientific (P2985; Waltham, MA, USA). Electric eel AChE (EC3.1.1.7), horse serum BChE (EC 3.1.1.8), acetyl thiocholine iodide, butyryl thiocholine chloride, 5,5′-dithiobis(2-nitrobenzoic acid) (DTNB), quercetin, berberine, and the MTT assay kit were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). For the cell culture experiment, Dulbecco’s modified Eagle’s medium (DMEM), Opti-MEM, fetal bovine serum (FBS), and penicillin/streptomycin were obtained from Capricorn Scientific (Ebsdorfergrund, Germany). β-secretase inhibitor III (β-SI) was purchased from Calbiochem (Darmstadt, Germany). The protease inhibitor mixture (a mixture of AEBSF, pepstatin A, E-64, bestain, leupeptin, and aprotinin) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Enzyme-linked immunosorbent assay (ELISA) kits for Aβ40 and Aβ42 were obtained from IBL (Kunma, Japan). All chemicals and solvents used were reagent grade, purchased from commercial sources, and used as received.
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2

Hypoxia-induced mTOR Signaling Pathway

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HT (purity ≥98%) was obtained from Extrasynthese, France. Dulbecco’s modified Eagle’s medium (DMEM) and sodium pyruvate were from Capricorn Scientific, Germany, foetal bovine serum (FBS) was from Sigma, USA, and Trypan Blue Solution, 0.4% from Thermo Fisher, USA. Primary antibodies mTOR (2972 S), p-mTOR (2971 S), S6 (2217 S) and p-S6 (2211 S) were purchased from Cell signaling Technology, USA; HIF-1α (A300–286A) from Bethyl, USA; PARP-1 (C-2-10) from Calbiochem, Germany; anti-poly(ADP-ribose) (α-PAR) (4355-MC) from Trevigen, USA; α-Tubulin antibody (T5168) from Sigma, USA and FIH-1 (sc-26219) from Santa Cruz, USA. Apoptosis was quantified using the FITC Annexin V Apoptosis Detection Kit with PI (ANXVKF, Immunostep, Spain). RNA was isolated using the RNeasyPlus Mini kit (Qiagen, Germany). cDNA Synthesis Kit for RT-qPCR and iTaq UniverSYBR for Real-time PCR were from Bio-Rad, USA. Primers were synthesized by Biomedal S.L. (Spain). ARNT siRNA (s1613 and s1615), scramble siRNA (sc-37007) and the transfection reagent jetPRIME were from Ambion, Santa Cruz and Polyplus Transfection, USA, respectively. HIF-1α siRNA was from Sigma (forward 5′-CUGAUGACCAGCAACUUGA-3′, reverse 5′-UCAAGUUGCUGGUCAUCAG-3′).
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3

Pharmacological Reagents and Cell Culture

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LY 379268 (Cat # 15351) was obtained from Cayman (Ann Arbor, MI, USA), JNJ-46281222 (Cat # GC39393) was obtained from GLPBIO (Montclair, CA, USA), L-glutamic acid (Cat # 56-86-0) was from Sigma Aldrich (St. Louis, MO, USA), Revefenacin Metabolite 1-[[4-[methyl-[2-[4-[(2-phenyl phenyl)carbamoyloxy]piperidin-1-yl]ethyl]carbamoyl]phenyl]methyl]piperidine-4-carboxylic acid (THRX-195518; Cat # 909800-36-8) was obtained from Clearsynth (Mumbai, India), and Dulbecco’s modified Eagle’s medium (DMEM) (Cat # DMEM-HXA) was obtained from CAPRICORN Scientific (Ebsdorfergrund, Germany).
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4

Isolation and Characterization of Adipose-Derived Stem Cells

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Both lipoma-derived stem cells (LDSCs) and adipose-derived stem cells (ADSCs) were isolated by enzymatic digestion of tissue samples, respectively, as we previously described [26 (link)]. Stromal vascular fraction (SVF) of cells, obtained from tissue homogenates after collagenase I digestion, was seeded in 25 cm2 cell culture flask (Greiner Bio One, Kremsmünster, Austria) in standard cell culture medium that contained Dulbecco’s modified Eagle’s medium (DMEM), 10% fetal bovine serum (FBS), 2 mM stable glutamine and 1% antibiotic-antimycotic solution (all purchased from Capricorn Scientific, Ebsdorfergrund, Germany). Media were changed 16–18 h after isolation to remove non-attached cells. After reaching confluency, the first cell passage was performed (P1), which enabled purification of mesenchymal stem cells. Cells were cultured in standard cell culture conditions, meaning temperature of 37 °C and humidified atmosphere with the presence of 5% CO2. Medium was changed every three days. Conditioned media (CM) of LDSCs (LDSC-CM) and ADSCs (ADSC-CM) were collected as a three-day medium just before passage 2 (P2) and stored at –80 °C until further analyses.
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5

Antioxidant and Cytotoxicity Assays

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Folin-Ciocalteu’s phenol reagent, the 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical, luminol, ethylenediaminetetraacetic acid (EDTA), H2O2, 3-(4,5-dimethythiazol-2-yl)-2,5-di-phenyltetrazolium bromide (MTT), FeCl6H2O, and L-ascorbic acid were purchased from Sigma-Aldrich (St. Louis, USA). Various solvents such as ethanol (EtOH) and ethyl acetate (EtOAc) were of analytical grade. In addition, Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum, penicillin-streptomycin, and trypsin used for cell culture were purchased from Capricorn Scientific (Ebsdorfergrund, Germany).
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6

Isolation and culture of HS68 human fibroblasts

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Human skin fibroblasts (HS68 cells) were purchased from Lonza (Basel, Switzerland). Dulbecco's modified Eagle's medium (DMEM), foetal bovine serum (FBS), trypsin, and penicillin-streptomycin were obtained from Capricorn Scientific (Ebsdorfergrund, Germany).
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7

Lung Cancer and Neuronal Cell Culture

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Human non-small cell lung cancer (NSCLC) cell lines (H441, A549, H460, H727, H520, H332m) were kindly provided by Prof. Julian Downward and the small cell lung cancer cell line (SCLC) H82 was kindly provided by Prof. Roman Thomas. They were cultured in a humidified 37 °C atmosphere containing 10% CO2 in RPMI 1640 medium (Thermo Fisher, Darmstadt, Germany) supplemented with 10% fetal bovine serum (FBS) (Sigma Aldrich, Taufkirchen, Germany) and 1000 U/mL of both penicillin and streptomycin (Sigma Aldrich, Taufkirchen, Germany), and were tested for mycoplasma at regular intervals (mycoplasma barcodes, Eurofins Genomics, Ebersberg, Germany). HT22 cells (kindly provided by David Schubert, Cellular Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA) were grown in Dulbecco’s modified Eagle’s medium (DMEM, Capricorn Scientific GmbH, Ebsdorfergrund, Germany) supplemented with 10% heat-inactivated FBS (Merck KGaA, Darmstadt, Germany), 100 U/mL penicillin, 100 mg/mL streptomycin (Capricorn Scientific GmbH, Ebsdorfergrund, Germany) and 2 mM L-glutamine (Merck KGaA, Darmstadt, Germany).
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8

Coelenterazine-Based Bioluminescence Assay

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Coelenterazine h was obtained from NanoLight, Pinetop, AZ. Dulbecco’s Modified Eagle’s Medium (DMEM), PBS, penicillin/streptomycin, and Trypsin-EDTA were from Capricorn Scientific Gmbh, Ebsdorfergrund, Germany. Poly-L-lysine hydrobromide, FCS, L-glutamine, PEI, acetlycholine iodide, methyl-3-(dimethylamino)propionate (Mda), and trimethyl-(5-methyl-furan-2-ylmethyl)-ammonium iodide (Fur) were obtained from Sigma-Aldrich, Merck KGaA, Darmstadt, Germany. Arecoline hydrobromide, pilocarpine hydrochloride, and methacholine chloride were from TCI Chemicals, Eschborn, Germany, and guvacoline hydrobromide from TRC Canada, Toronto, Canada. Pertussis toxin was purchased from EMD Millipore Corp., Merck KGaA. FR900359 was isolated from Ardisia crenata leaves as previously described in Schrage et al., 2015 (link).
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9

Culturing Mouse Mammary and Fibroblast Cells

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The mouse mammary epithelial HC11 cell line was purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA), and the mouse embryonic fibroblast NIH3T3 cell line was kindly provided by Dr. Young Bong Kim (Konkuk University, Seoul, Korea). HC11 cells were maintained in Roswell Park Memorial Institute 1640 medium (RPMI 1640; Capricorn Scientific, Ebsdorfergrund, Germany) supplemented with 10% fetal bovine serum (FBS; Merck, Kenilworth, NJ, USA) and 1% penicillin/streptomycin (Capricorn Scientific). NIH3T3 cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM; Capricorn Scientific) supplemented with 10% FBS and 1% penicillin/streptomycin. Both cell lines were grown in a humidified incubator at 37 °C under 5% CO2 conditions.
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10

Enzymatic Assay for PTEN and Thioredoxin Activity

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The recombinant wild type PTEN and Trx1 were purified as previously described [27 (link)]. Thioredoxin reductase was purified from the mouse liver as described previously [49 (link)]. β-Nicotinamide adenine dinucleotide 2′-phosphate reduced tetrasodium salt hydrate (NADPH), N-ethylmaleimide (NEM), N,N-dimethylformamide (DMF), and dl-dithiothreitol (dl-DTT) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Hydrogen peroxide (H2O2) was purchased from OCI Company Ltd. (Seoul, Korea). tert-Butyl hydroperoxide (t-BHP) was purchased from Alfa Aesar (Ward Hill, MA, USA). Protease inhibitor (Complete ULTRA Tablets) was purchased from Roche Diagnostics GmbH (Indianapolis, IN, USA). PTEN antibody was prepared as previously described [50 (link)]. Anti-Trx1 and anti-rabbit IgG horseradish peroxidase-conjugated antibodies were purchased from Ab Frontier (Daejeon, Korea). Anti-tubulin antibodies were from Sigma-Aldrich. Immobilon Western chemiluminescence horseradish peroxidase substrate was purchased from Millipore Corporation (Billerica, MA, USA). NAP-5 Columns (Sephadex G-25 DNA Grade) were purchased from GE Healthcare (Little Chalfont, UK). Dulbecco’s modified Eagle’s medium (DMEM) and fetal bovine serum (FBS) were purchased from Capricorn Scientific GmbH (Ebsdorfergrund, Germany).
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