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5975 series msd

Manufactured by Agilent Technologies
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The 5975 series MSD is a mass selective detector designed for gas chromatography analysis. It provides sensitive and reliable detection of a wide range of compounds. The 5975 series MSD is a core component of analytical workflows, enabling the identification and quantification of substances in complex samples.

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9 protocols using 5975 series msd

1

Fatty Acid Composition Analysis by GC/MS

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Fatty acid composition was analysed by gas chromatography-mass spectrometry (GC/MS) using an Agilent 5975 series MSD and an Agilent 7890 A instrument equipped with an HP-5 column (30 m × 0.25 mm, film thickness 0.25 m; HP). The program used for GC/MS analysis was as follows: 140 °C for 2 min, heating to 180 °C at a rate of 5 °C/min holding at 180 °C for 5 min, heating to 230 °C at 5 °C/min, holding at 230 °C for 6 min with electron ionisation of 70 eV (Guo et al. 2019 (link)). Fatty acid composition of microbial lipids produced under different nutritional conditions were statistically analysed by t-tests and p ≤ 0.05 was considered to indicate statistical significance.
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2

Analytical Characterization of Organic Compounds

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The GC-MS analyses were performed with a 7820A GC system connected with a mass detector of 5975 series MSD from Agilent Technologies and a nonpolar cross-linked methyl siloxane column with dimensions of 12 in × 0.200 mm × 0.33 µm was used. The 1H and 13C NMR spectra were recorded on a Bruker AVANCE III- 400 MHz spectrometer. 1H NMR spectra were collected at 400 MHz with chemical shift referenced to the residual CHCl3 peak in CDCl3 (δ: H 7.26 ppm). 13C NMR spectra were collected at 100 MHz and referenced to the CDCl3 signal (δ: C 77.0 ppm)46 (link). Only in case of phthalimide the solvent was DMSO-d6, and chemical shifts were referenced to the residual DMSO-d5 peak in DMSO-d6 (δ: H 2.50 ppm) for 1H NMR and the DMSO-d6 peak (δ: C 39.51 ppm) for 13C NMR46 (link). The spectral data of imide products were compared with the literature reports47 (link).
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3

GC-MS Analysis of Policosanol Compounds

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GC-MS analyses were performed using a capillary HP-5MS column (30 m × 0.25 mm I.D., 0.25 μm film thickness; Agilent Technologies) with gas chromatography (Agilent Technologies 7820A) coupled directly to the mass detector (Agilent Technologies 5975 series MSD). Helium was used as carrier gas, with a constant flow rate of 1 ml/ min. The injector and detector temperatures were 230 °C. The oven temperature was programmed from 150 to 320 °C at 10 °C·min − 1 from 150 to 250 °C and at 5 °C·min − 1 from 250 to 320 °C. Manual injection of 1 μL of the aliphatic alcohol solution was performed in the split mode at a 10:1 split ratio. The policosanol compounds were identified by comparing their mass spectra with the Wiley 275.L Mass Spectral Library.
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4

Yeast Lipid Profiling and PUFA Elongation

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Total lipids were extracted from yeast samples and fatty acids derivatized to methyl esters (FAME) as described in detail previously48 (link). FAME were identified and quantified after splitless injection and run with temperature programming in an Agilent 6850 Gas Chromatograph system equipped with a Sapiens-5MS (30 m × 0.25 μm × 0.25 μm) capillary column (Teknokroma, Barcelona, Spain) coupled to a 5975 series MSD (Agilent Technologies, Santa Clara, CA, USA) as described by Monroig et al.27 (link). The elongation of exogenously added PUFA substrates (18:3n-3, 18:2n-6, 18:4n-3, 18:3n-6, 18:4n-3, 20:5n-3, 20:4n-6, 22:5n-3 and 22:6n-3) was calculated by the step-wise proportion of substrate FA converted to elongated product as [areas of first product and longer chain products/(areas of all products with longer chain than substrate + substrate area)] × 10015 (link).
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5

Comprehensive FAME Analysis and PUFA Elongation

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Fatty acyl methyl esters (FAME), prepared from total lipids extracted from harvested cells, were analyzed using a Thermo Gas Chromatograph (Thermo Trace GC Ultra, Thermo Electron Corporation, Waltham, MA, USA) fitted with an on-column injection system and a FID detector. Further confirmation of FAME was performed with an Agilent 6850 Gas Chromatograph system coupled to a 5975 series MSD (Agilent Technologies, Santa Clara, CA, USA). The elongation conversion efficiencies from exogenously added PUFA substrates were calculated by the proportion of substrate fatty acid converted to elongated products as (all product areas/(all product areas + substrate area)) x 100.
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6

Characterization of Policosanol and Sterols in Seed Oils

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The policosanol and sterol composition of the tested oils was determined by GC-MS as described by Harrabi et al. 15) . GC-MS analyses were performed using a capillary HP5MS column (30 m×0.25 mm I.D., 0.25 μm film thickness; Agilent Technologies) with gas chromatography (Agilent Technologies 7820A) coupled directly to the mass detector (Agilent Technologies 5975 series MSD) . Tocopherols were analysed by HPLC according to the method described by Deiana et al. 16) . The separation of tocopherol isomers was accomplished on an Atlantic column (4.6×150 mm, 5 μm) .
The fatty acid composition of the seed oil was determined by gas chromatography (GC) . Fatty acid methyl esters were analysed by GC using a HP 6890 chromatograph equipped with a flame ionisation detector (FID) on a capillary column, CP-Sil 88 (50 m length, 0.25 mm id, 0.2 μm film thickness; Varian) .
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7

Volatile Compounds Profiling by GC-MS

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Separation, identification and semi-quantification of volatile compounds were performed on a GC 7820 A gas chromatograph (Agilent Technologies, Santa Clara, CA, USA) coupled with a 5975 Series MSD, Agilent mass spectrometer detector. The GC-MS system was equipped with an ZB-Wax column (Phenomenex; 60 m × 0.25 mm × 0.25 µm film thickness). For the SPME injections, the temperature of the column began at 40 °C and was held for 5 min, increased 3 °C·min−1 up to 220 °C. The constant column flow was 1.2 mL·min−1, using hydrogen (99.995%) as a carrier gas, and the injection port was at 250 °C. Mass spectra were scanned at 70 eV over a mass range from m/z 10 to 1000.
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8

Analyzing Fatty Acid Derivatives in Reaction Media

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The concentrations of the remaining fatty acids and accumulated keto-fatty acid in the reaction medium (e.g., ricinoleic acid, 12ketooleic acid) were determined as previously described [7] . The reaction medium was mixed with ethyl acetate containing 0.1 or 0.5 g/l palmitic acid as an internal standard. The organic phase was harvested after vigorous vortexing and then subjected to derivatization with N-methyl-N-(trimethylsilyl) trifluoroacetamide (TMS)/pyridine (1:3 (v/v)). The TMS derivatives were analyzed using a 5975 series MSD and Agilent 7890A gas chromatograph. The derivatives were separated on a nonpolar capillary column (30 m length, 0.25 µm film thickness; HP-5MS; Agilent Technologies, Palo Alto, CA, USA). A linear temperature gradient was programmed as 90°C, 5°C/min to 280°C, with an injection port temperature of 230°C. Samples were injected at a split ratio of 1:5. Mass spectra were obtained by electron impact ionization at 70 eV. Scan spectra were obtained within the 100-600 m/z range. Selected ion monitoring was used for the detection and fragmentation analysis of the reaction products [6] .
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9

Volatile Profiling of Plant Extracts

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The selection of the most representative compound in each plant (i.e. to follow the evolution of the maceration during the experimental design) was carried out after analysis by GC-MS of the corresponding essential oil previously obtained by ASE. This extraction was performed using a Dionex extractor (ASE 350) obtained from Vertex Technics (Barcelona, Spain) in accordance with the procedure described by Rodríguez-Solana et al. 17 The volatile profile of the methanolic extracts obtained was determined using an Agilent 7820A gas chromatograph (Agilent, Santa Clara, CA, USA) equipped with an Agilent 5975 series MSD and a nonpolar HP-5MS column (5% diphenyl, 95% dimethylpolysiloxane, length 30 m, inner diameter 0.25 mm, film thickness 0.25 mm) with a ramp temperature and operating in the electron impact mode (70 eV) and with transfer line and ion source temperatures maintained at 230 ∘ C. The injector temperature was maintained at 250 ∘ C, whereas that of the quadrupole was 150 ∘ C. Carrier gas used was H 2 (from a Hydrogen generator AD-180 Series; CINEL, Padova, Italy) at a flow of 1.5 mL min -1 . The amount of sample injected was 0.5 𝜇L (in splitless mode). The oven temperature was programmed as: 50-220 ∘ C (2.5 ∘ C min -1 ), 220-300 ∘ C (10 ∘ C min -1 ). The identification procedure was as described by Rodríguez-Solana et al. 17
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