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13 protocols using decalcifying solution

1

Picrosirius Red Staining of Femoral Bone

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Femoral bone tissues were decalcified in decalcifying solution (Sigma-Aldrich Chemicals) and dehydrated in a graded series of ethanol solutions for 18 h. For the histological staining of picrosirius red, femoral bone tissues were then embedded in paraffin and cut into 7 μm sections in thickness. picrosirius red staining was commercially used for detecting bone collagen. The sections were placed on glass slides, deparaffinated, and hydrated with xylene and graded alcohol. These sections were incubated with picrosirius red (Sigma-Aldrich Chemicals) solution overnight at RT. After each slide was mounted in VectaMount Mounting Medium (Vector Laboratories, Burlingame, CA), images were taken using an Axiomager optical microscope system (Zeiss, Oberkochen, Germany).
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2

Histology of Mouse Leg Tissues

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Mouse legs were fixed in 4% paraformaldehyde solution and incubated in decalcifying solution (Sigma, St. Louis, MO, USA) for 3 days. The legs were then embedded in paraffin and sliced into 3-μm sections for staining. The sections were deparaffinized with o-xylene for 30 min and then rehydrated with 100%, 80%, 70% and 60% (10 min for each step). After rinsing with tap water, nuclei were stained with iron hematoxylin solution for 5 min and then washed with distilled water. Biebrich scarlet-acid fuchsin solution (Sigma) was used to visualize muscle fibers by staining tissue for 10 min. Collagen was then differentiated by staining with 5% phosphomolybdic-phosphotungstic acid solution, after which the sections were rinsed with distilled water. Collagen fibers were stained with 2.5% aniline blue solution for 10 min. After a final wash with distilled water, the slides were dehydrated with 95% ethyl alcohol and cleared in o-xylene. Stained tissue slides were imaged on a Pannoramic MIDI slide scanner (3DHISTECH Ltd, Budapest, Hungary). Manual shots were operated, magnified (40x), and observed under polarized light. Images were analyzed using ImageJ software (NIH, Bethesda, MD, USA; http://rsbwed.nih.gov/ij/). The total blue area was determined as the pixel percentage of the image. Dermal thickness was measured by Pannoramic Viewer version 1.15.2 (3DHISTECH Ltd).
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3

Histological and Immunohistochemical Analysis of Dental Extracellular Matrix Proteins

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The harvested samples were fixed in 10% neutral buffered formalin (NBF, Leica Biosystem) at room temperature for 24 h. Afterward, decalcified in decalcifying solution (Sigma‐Aldrich) at room temperature for 7 days. The samples were paraffin‐embedded and sectioned into 5 μm thick sections. Deparaffinized sections were stained with Hematoxylin and Eosin (H&E) staining.
For immunohistochemistry, deparaffinized sections were rehydrated and subjected to antigen retrieval at 37°C for 30 min. The samples were protein blocked with a serum‐free blocking solution at room temperature for 1 h, then, incubated with anti‐OPN (1:100 dilution, Abcam, MA, USA), anti‐OCN (1:50 dilution, Santa Cruz, CA, USA), anti‐DSPP (1:50 dilution, Santa Cruz, CA, USA), and ani‐DMP‐1 (1:500 dilution, Santa Cruz, CA, USA) primary antibodies at 4°C overnight. The samples were incubated with the secondary biotinylated anti‐goat antibody (BA‐5000, Vector Laboratories) for 30 min. Streptavidin‐conjugated horseradish peroxidase (SA‐5704, Vector Laboratories) was added for 30 min, and the samples were stained with 3,3′‐Diaminobenzidine (DAB). Then, Gill's hematoxylin was used to counterstain the cell nuclei. The stained sections were visualized under the light microscope and the positive areas of OPN, OCN, DSPP, and DMP‐1 were measured using Image J software.
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4

Murine Arthritis Scoring and Histology

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None of the control mice developed arthritis. Arthritis score and foot thickness (all four paws) were observed three times weekly at intervals of one or more days until Day 30 post-primary immunization using a triple-blind test. The severity of arthritis was expressed as the mean arthritis index, graded on a scale of 0–4 (0, no arthritis; 1, light edema at the point of one finger; 2, edema at several points on a finger or in the joints of the wrist or ankle; 3, pervading edema involving the entire paw; 4, maximal pervading edema involving the entire paw and deformation of the joints (ankylosis) with impaired function). The maximum total arthritis score that each mouse could receive was 16. On Day 30, all mice were sacrificed, and paws were collected. Paws from each group were fixed in 4% PFA, decalcified in decalcifying solution (Sigma-Aldrich, Burlington, MA, USA) diluted 1:10 with deionized water and embedded in paraffin. Serial sections (10 μm) were prepared and stained with hematoxylin and eosin (H&E).
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5

In Vitro Osteoblast Differentiation

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Alizarin Red S powder, formaldehyde solution, antibiotic-antimycotic solution, decalcifying solution, and cetylpyridinium chloride were obtained from Sigma-Aldrich (St. Louis, MO, USA). α-MEM medium and fetal bovine serum (FBS) were purchased from Gibco (Grand Island, NY, USA). Rat osteoblast differentiation medium was provided by Cell Applications (San Diego, CA, USA). Phosphate-buffered saline (PBS) and 0.25 % trypsin-EDTA solution were purchased from Welgene (Daegu, Korea). Primary antibodies against osterix, alkaline phosphatase (ALP), and GAPDH were purchased from Abcam (Cambridge, UK). Type-1 collagen and FGF2 were obtained from Novus Biologicals (Centennial, CO, USA). Antibodies to P-Met, c-Met, and Runx-2 were provided by Cell Signaling Technology (Danvers, MA, USA). The osteocalcin antibody was obtained from Bioss (Woburn, MA, USA). Hydroxyapatite/beta-tricalcium phosphate (HA/β-TCP) ceramic powder was purchased from Biomatlant (Vigneux, France). Rat HGF ELISA Kit, Rat FGF2 ELISA Kit and recombinant FGF2 protein were obtained from R&D Systems (Minneapolis, MN, USA). The rat VEGF enzyme-linked immunosorbent assay (ELISA) kit was purchased from Abclonal (Woburn, MA, USA). Rat SDF-1α ELISA Kit was provided by Biorbyt (Cambridge, UK). Recombinant rat HGF protein was purchased from LifeSpan BioSciences (Seattle, WA, USA).
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6

Histological Evaluation of Induced Arthritis

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The CFA-injected hind limbs and mBSA/IL-1β-induced knee joints were fixed in 4% paraformaldehyde (Biosesang, Korea), decalcified in a decalcifying solution (Sigma) for 36 h, and embedded in paraffin. Sections (4-μm thick) were cut in the sagittal plane and stained with H&E. The slides were scanned using a Pannoramic MIDI digital slide scanner (3DHISTECH). Images were extracted using the Case Viewer software (3DHISTECH). The joint sections were cut at five depths that were approximately 100 μm apart. The slides were qualitatively evaluated using the following parameters: synovial hyperplasia, inflammation, and bone destruction. Disease severity was graded histologically from 0 (normal) to 3 (severe) by an investigator blinded to the experimental groups (20 (link)).
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7

Murine Model of Gouty Arthritis

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Briefly, MSU crystals were dissolved in PBS and then sonicated at 100% Amp three times for 10 min each. Sonicated MSU crystals (2.5 mg 100 μl−1 mice−1) were subcutaneously injected under the plantar surface of the paws of Ncoa6+/− mice and WT mice. Paw and ankle swelling were measured with an electronic caliper by a researcher blinded to genotype at the indicated time points. Six or twenty-four hours after the injection of MSU crystals, tissues were collected from the affected joints and fixed with 4% paraformaldehyde for 24 h. The fixed tissue was decalcified with decalcifying solution (Sigma‒Aldrich) for 36 h, paraffin-embedded, and sectioned at 4 μm. For pathohistological analysis, the sectioned slides were processed for H&E staining and immunohistochemical staining using Abs against IL-1β, p20, a macrophage marker or a neutrophil marker. The same experiment was repeated with myelomonocytic cell-specific Ncoa6-deficient mice and Ncoa6fl/fl mice. The histological severity of gouty arthritis was assessed as previously described [60 (link)].
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8

Decalcification and Tissue Sectioning

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The specimens from each group were decalcified in a decalcifying solution (Sigma, USA) for 6 h, followed by serial dehydration with a graded ethanol series (80-100%). Then, the samples were embedded in paraffin and sectioned at 10 μm thickness and then stained with hematoxylin and Eosin (H&E) and Masson’s trichrome (MT) stains. The stained area was calculated with the MT-stained images (n = 4) using the ImageJ (National Institutes of Mental Health, USA).
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9

Histological Analysis of Femoral Bone

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The right femoral bones were fixed in 4% paraformaldehyde, and then decalcified in decalcifying solution (Sigma-Aldrich chemical, St. Louis, MO, USA) for 4–6 h. The bone tissues were dehydrated in a graded series of ethanol solutions for 18 h, followed by paraffin embedding. For histological analyses, paraffin-embedded tissues were longitudinally cut into 5 μm cryostat sections (Microm HM 520 Cryostat, GMI Inc., Ramsey, MN, USA). The tissue sections were deparaffinized and hydrated with xylene and graded ethanol. The hematoxylin and eosin (H&E) staining was applied for the histological observation of bone tissues.
The Picrosirius red staining was employed for detecting bone collagen fibers. The tissue sections were incubated with Picrosirius red solution (Sigma-Aldrich chemical, St. Louis, MO, USA) overnight at room temperature. The images were taken using an optical Axiomager microscope system after each slide was mounted in VectaMount mounting medium (Vector Laboratories, Burlingame, CA, USA).
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10

Histological Ankle Joint Analysis

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Ankles were formalin-fixed, decalcified with a decalcifying solution (Sigma-Aldrich), and embedded in paraffin. Ankle joint sections (5 μm) were subjected to hematoxylin and eosin (H&E) and safranin O staining. Slides were imaged using a Nikon microscope imaging system and NIS-Elements software (Nikon Instruments, Tokyo, Japan). The assessment of synovial inflammation, bone erosion, and cartilage damage was conducted as previously described (36 (link)).
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