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Pcdna3.1d v5 his

Manufactured by Thermo Fisher Scientific
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PcDNA3.1D/v5-his is a mammalian expression vector designed for high-level expression and purification of recombinant proteins in a variety of cell lines. The vector features a strong cytomegalovirus (CMV) promoter, a multiple cloning site for insertion of the gene of interest, and a C-terminal V5 epitope and polyhistidine (6xHis) tag for detection and purification of the expressed protein.

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5 protocols using pcdna3.1d v5 his

1

Design and Cloning of Screening Constructs for Splicing

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Screening constructs used for detection of cis-splicing and correct trans-splicing were designed and cloned according to the protocol of Bauer et al. [21 (link)]. Concisely said, the KRT14-scRTM carries a 5′ split-GFP part consisting of the first nucleotides (nt: 1–336) from a full length acGFP (pacGFP vector, Clontech, Mountain View, CA, USA) and a BD sequence that specifically targets Intron 7 of KRT14 cloned into the pcDNA3.1D/V5-HIS (Invitrogen, Carlsbad, CA, USA) backbone. The KRT14-scMG spanning exon 5 to intron 7 was generated using a KRT14 exon 5 forward primer (5′-GATCAAGCTTCACCACAGAGGAGCTGAACCGCGAGGTGGC-3′) and a KRT14 intron 7 reverse primer (5′-GATCGGATCCGGGGAAGAGGTGGGAAGAGGACGTTACC-3′) for amplification via GoTaq DNA polymerase (Promega, Madison, MI, USA). Afterwards, the amplified PCR product was cloned into the screening vector backbone downstream to the CMV-promoter (pcDNA3.1, Invitrogen, Carlsbad, CA, USA) using HindIII and BamHI restriction sites [21 (link),28 (link)]. The KRT14-scMG also carries the 3′ split-GFP portion consisting of the rearward part of acGFP (nt: 337–720) to enable a reconstitution of the full length acGFP upon accurate trans-splicing.
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2

Reverse Transcription and qPCR for FBXL-2 Expression

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Total RNA was isolated and reverse transcription was performed followed by quantitative real-time PCR with SYBR Green qRCR mixture as described. PCR-based approaches were used to clone FBXL-2 into pcDNA3.1D/v5-his (Invitrogen) for constitutive expression in cells. All mutant constructs were generated using PCR-based methods with appropriate primers. RAW 264.7 cells were plated in 48 well plates at the density of 2.8 × 105 cells per well, and the cells were cultured for 18 h. Then, 12 h after transfection, cells were moved to six-well plates, delivered into different groups, and incubated for further 18 h.
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3

Generation of E3 ligase constructs

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SOCS1, KIAA0317, other E3 ligases, and deletional mutants were PCR cloned or subcloned into pcDNA3.1D-V5-HIS (Invitrogen) through TOPO cloning. Point mutants (e.g., Lysine to Arginine, etc.) were generated through QuikChange II XL Site-Directed Mutagenesis Kit (Aglient). All plasmid constructs were verified by DNA sequencing (Genewiz).
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4

Overexpression and Knockdown of SFXN Proteins

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Plasmids encoding FLAG-SFXNs were obtained from GenScript. Empty vector (pcDNA3.1D V5-His) was obtained from Invitrogen. HEK293T cells were seeded into 60 mm Petri dishes (1 × 106 cells/dish) and transfected with 3 μg of DNA using Lipofectamine LTX (Life Technologies, Carlsbad, CA, USA) following manufacturer instructions. For RNA interference (RNAi) experiments, MCF7 cells were transiently transfected with either a scrambled control siRNA (Control siRNA-A sc-37007, Santa Cruz Biotechnology, Inc., Heidelberg, Germany) or a pool of specific siRNA for SFXN1 (sc-91814, Santa Cruz Biotechnology, Inc., Heidelberg, Germany). Transfection was performed using Interferin™ transfection reagent following manufacturer instructions (Polyplus-Transfection Inc., New York, NY, USA). Briefly, a mix of siRNA and Interferin™ transfection reagent was incubated for 10 min at room temperature (RT) and added to each well at a final concentration of 10 nM. Cells were incubated at 37 °C under standard culture conditions and collected after 3, 4, or 7 days to extract proteins.
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5

Cloning F-box Proteins for Mammalian Expression

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PCR-based approaches were applied to clone different F-box proteins into pcDNA3.1D/v5-his (Invitrogen) for expression in mammalian cells using appropriate primers. All mutants were constructed using PCR-based approaches or site-directed mutagenesis (Agilent).
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