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Standard curve

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A standard curve is a graphical representation of the relationship between the concentration of a substance and its corresponding measurement response. It is a fundamental tool used in analytical chemistry and biochemistry to quantify the amount of a target analyte in a sample. The standard curve is generated by measuring the response of known concentrations of the analyte and plotting the results on a graph. This allows the concentration of an unknown sample to be determined by interpolating its measured response against the standard curve.

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7 protocols using standard curve

1

In vivo Angiogenesis Assay in Mice

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In vivo Matrigel angiogenesis assay was performed as previously described39 (link). C57 black mice (20–25 g) were supplied by Charles-River (Calco (LC), Italy) and kept in temperature- and humidity-controlled rooms (22 °C, 50%) with lights on from 07:00 to 19:00 h, water and food available ad libitum. All procedures were carried out in accordance with the Italian law (Legislative Decree no.116, 27 January 1992), which acknowledges the European Directive 86/609/EEC. All efforts were made to minimize the number of animals used and their suffering. VEGF or EP peptides were diluted in Matrigel (Becton Dickinson, growth factors and phenol red-free) on ice to a final concentration of 500 ng. Mice were subcutaneously injected in the dorsal midline region with 0.3 ml of Matrigel alone or with Matrigel containing the stimuli. After 10 days mice were euthanized and implants recovered. Plugs were resuspended in 1 ml of Drabkin’s reagent for 18 h on ice and haemoglobin concentration was determined by absorbance at 540 nm and compared with a standard curve (Sigma-Aldrich, Milan, Italy).
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2

In vivo Matrigel Angiogenesis Assay

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Investigation has been conducted in accordance with the ethical standards and according to the Declaration of Helsinki and the Italian law (Legislative Decree no.26, 4 March 2014), which acknowledges the European Directive 2010/63/UE, being approved by the authors’ institutional review board and the Italian Ministry of Health. All efforts were made to minimize the number of animals used and their suffering. In vivo Matrigel angiogenesis assay was performed as previously described [32 (link)]. C57 black mice (20–25 g) were kept in temperature- and humidity-controlled rooms (at 22° C) with lights on from 7 am to 7 pm, water and food available ad libitum. VEGF (300 ng) in presence/absence of Ni(SalPipNONO) (0.5 mM) was diluted in growth factor and phenol red-free Matrigel (Becton Dickinson, Franklin Lakes, NJ, USA) on ice. Mice were subcutaneously injected in the dorsal midline region with 0.4 ml of Matrigel. After 10 days, mice were euthanized and implants harvested. Plugs were re-suspended in 1 ml of Drabkin′s reagent (Sigma Aldrich, St. Louis, MO, USA) for 18 h on ice and hemoglobin concentration was determined by absorbance at 540 nm and compared with a standard curve (Sigma Aldrich, St. Louis, MO, USA).
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3

Quantifying Indole Acetic Acid Production in Rhizobacteria

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Vikram et al. (2007) devised a quantitative method to quantify indole acetic acid production by selected rhizobacterial strains [120 (link)]. In a 100 mL conical flask, 25 mL of the supernatant of the most potent 34 chilli-rhizobacterial isolates were collected and we adjusted the pH to 2.8 with 1 N HCl. We added appropriate amounts of diethyl ether to the reaction mixture, which had incubated in the dark for 4 h. In a different funnel, diethyl ether would be used to extract indole acetic acid at 4 °C. The organic phase was separated and the solvent was collected to determine the amount of IAA in the methanol extract. Subsequently, 0.5 mL of methanol extract, 1.5 mL of double distilled water and 4 mL of Sapler’s reagent (1 mL of 0.5 M FeCl3 in 50 mL of 35% perchloric acid) were added and incubated in the dark for 1 hour. In a spectrophotometer, the intensity of the pink color produced was measured at 535 nm. The amount of IAA in the supernatant was calculated using a standard curve with a known concentration of IAA (Sigma–Aldrich, Germany) and represented as µg/25 mL of medium.
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4

Colorimetric assay for IAA production

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The IAA production by the selected strains was estimated with a colorimetric assay using Salkowski’s reagent (0.5 M FeCl3 in 35% HClO4 aqueous solution) that is able to reveal in the presence of indole compounds such as IAA [16 (link)]. In particular, the strains were grown in 10 mL of R5A [17 (link)] and incubated for 24, 48, and 72 h (30 °C, 180 rpm). After incubation, the cultures were centrifuged, and the supernatants were mixed with Salkowski’s reagent (1:1). The optical density (OD) was recorded at 530 nm after 30 min of incubation, and a standard curve with known concentrations (0.5–100 μg mL−1) of IAA (Sigma-Aldrich) was used to determine the amount of IAA produced.
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5

In Vivo Angiogenesis Assay in Mice

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The in vivo angiogenesis assay was performed as previously described [20 (link)]. Eight C57 black mice (20–25 g) were kept in temperature- and humidity-controlled rooms (22 °C, 50%) with lights on from 07:00 to 19:00 h, and water and food available ad libitum. The investigation was conducted in accordance with the ethical standards and according to the Declaration of Helsinki and the Italian law (Legislative Decree no.26, 4 March 2014), which acknowledges the European Directive 2010/63/UE, being approved by the authors’ institutional review board and the Italian Ministry of Health (authorization n. 55/2017-PR).
The mice were SC injected in the dorsal midline region with 0.4 mL of Bioregen® or Regenyal Idea Bioexpander®. In some of the experiments, the HA preparations were mixed with Matrigel (Becton Dickinson, Waltham, MA, USA) (1:1, v:v) on ice. At different times, compatible with the biomaterial half-life once injected (1–9 days for the absorbable Bioregen® and 1–4 weeks for Bioexander®), mice were sacrificed by CO2 inhalation and implants were harvested. The implants were re-suspended in 1 mL of Drabkin’s reagent (Sigma-Aldrich, St. Louis, MO) for 18 h on ice, and haemoglobin concentration was determined by absorbance at 540 nm and compared with a standard curve (Sigma-Aldrich, St. Louis, MO). Some plugs were stored at −80 °C for protein extraction and Western blot analysis.
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6

Quantification of Cellular ROS Levels

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The DCFH-DA probe was used for ROS determination as described somewhere else 33 (link). Treated and control cells were lysed and diluted 1:10 with Tris 40 mM (pH 7.4) plus DCFH-DA (2′,7′-dichlorofluorescein diacetate; Molecular Probes, Eugene, OR, USA) 5 µM in methanol for 15 min at 37 °C. Fluorescence intensity was measured before and after 60 minutes of incubation in an LS50-B luminescence spectrometer (Perkin-Elmer, Boston, MA, USA). The reaction with superoxide anion, hydrogen peroxide, and hydroxyl radical to produce an oxidized, fluorescent DCFH derivative named DCF was monitored at an excitation wavelength of 525 nm (slit width = 5 nm). The bucket holder was thermostatically kept at 37 °C. Autofluorescence of the cellular lysate was less than 6% at any time. The fluorescent signals of both methanol (vehicle) and the substrates were recorded at the baseline, before DCF formation. DCF was quantified from a standard curve (Sigma Aldrich, St. Louis, MO, USA) in methanol.
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7

Fungal Biomass Quantification via Ergosterol UHPLC

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To determine fungal biomass, ergosterol, a sterol present in fungal cell membranes, was quantified by ultra-high-performance liquid chromatography (UltiMate 3000, Thermo Scientific UHPLC system) using a LiChrospher 100 RP18 (5 μm) column (Merck) in 6 lyophilized chestnut leaf discs per replicate. Lipid extraction was carried out from the chestnut leaf discs by heating (80°C, 45 min) in KOH-methanol (0.8%), before purified by solid-phase extraction and eluted in isopropanol (Sigma-Aldrich, analytical grade). Ergosterol peaks were monitored at 282 nm and eluted (at 1.4 mL min -1 ) with methanol (Sigma-Aldrich, HPLC-grade). The concentrations of ergosterol from the samples were computed using a standard curve (Sigma-Aldrich) in isopropanol. The extracted ergosterol was converted to fungal biomass considering the factor of 5.5 μg of ergosterol per mg dry biomass (Gessner and Chauvet 1993) .
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