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4 protocols using ab7750

1

Antibody Panel for Stem Cell Research

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Rabbit polyclonal antibodies for NR0B1 (ab60144), NR5A1 (ab65815), and acetyl-histone H3 (ab47915); rabbit monoclonal antibodies for NR5A2 (ab125034), NANOG (ab109250), OCT3/4 (ab109183), AR (ab133273), SOX2 (ab92494), and STAT3 (ab68153); and mouse monoclonal antibodies for H3K4me3 (ab6000), H3K9me2 (ab1220), H3K27me3 (ab6002), α-TUBULIN (ab7750) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH, ab9482) were obtained from Abcam (Cambridge, MA). The rabbit polyclonal antibody for acetyl-histone H4 (06-598) was purchased from Millipore (Temecula, CA). The mouse monoclonal anti-FLAG antibody (F1804) was purchased from Sigma–Aldrich (St. Louis, MO).
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2

Visualizing Meiotic Spindle and Histone Modifications

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Oocytes and zygotes were fixed and permeabilized with 0.2% Triton X-100 in 4% paraformaldehyde for 30 min at room temperature followed by blocking in 2% BSA in PBS for 1 h or kept in blocking buffer overnight. To visualize the meiotic spindle, MII oocytes were stained with mouse anti-Tubulin (Abcam, ab7750) diluted 1:100 for 1 h at room temperature. To visualize H3K9me3 histone modification, rabbit anti-H3K9me3 (Upstate, 07-442) was used at 1:1,000 dilution overnight at 4 °C. MII oocytes and zygotes were incubated with secondary antibody conjugated with Alexa 488 or Alexa 594 (Thermo Fisher Scientific) diluted at 1:500 for 1 h at room temperature. DNA was stained with 1 μg ml−1 DAPI for 10 min. The Leica DM6000 microscope and SP8 confocal microscope were used for data collection, LAS AF LITE 3.3 software (Leica) was used for image processing, and Imaris v.9.6 (Bitplane) was used to determine the length and volume of the spindle and metaphase plate by three-dimensional reconstruction.
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Limb Bud Development Gene Expression Analysis

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Mouse E11.5 limb buds were dissected, cut in half as shown in Figure 1A and total cellular RNA was purified from each half using an RNeasy Plus Mini RNA isolation kit (Qiagen). RT-qPCR was performed using standard conditions [59] (link). qPCR analysis was conducted on a 7900HT real-time PCR machine (Applied Biosystems) using Fast SYBR Green Master Mix (Qiagen). Primers used in qPCR: GATA1- ATCAGCACTGGCCTACTACAGAG and GAGAGAAGAAAGGACTGGGAAAG, GATA2- CGCTCATCAAGCCCAAGC and ATTGTGCAGCTTGTAGTAGAGGCC, GATA3- CCTACTACGGAAACTCCGTCAGG, CAGGGCAGAGATCCGTGC, GATA4- TGGAAGACACCCCAATCTCG and TAGTGTCCCGTCCCATCTCG, GATA5- AACCGACCGCTAGTGAGGC and GCGTTGCACACTGGTTCG, GATA6- TACACAAGCGACCACCTCAG and CTATGTAGAGGCCGTCTTGACC, FOG1- GGAGACATGTCCAGGAGGAAAC and CCATGGCCTTGGCTTCTTC, FOG2- AGCCATTCAGACAAACCAGG and CATCTCTCTGAAACACTTCTAGCTCTC, Shh- CCGACATCATATTTAAGGATGAGG and CAAGGCATTTAACTTGTCTTTGC, Gli1- TCAAGGCCCAATACATGCTG and AGGACTTCCGACAGCCTTCA, Grem1- GGACCCACGGAAGTGACAG and GGCTCCTTGGGAACCTTTC. For Western analysis, mouse E11.5 limb buds were dissected as described above, proteins were separated by SDS-polyacrylamide gel electrophoresis, transferred to a membrane by Western blot, and the membranes probed with goat anti-Gli3 (AF3690, R&D systems) and mouse anti-alpha Tubulin (ab7750, Abcam) antibodies.
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Western Blot Analysis of EMB-9::mCherry

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Following treatment with Antimycin A, animals expressing EMB-9::mCherry (n = 300) were collected in 1.5-ml microfuge tubes. After 2 washes with M9 buffer, animals were immediately frozen in liquid N2. This was followed by thawing and addition of 100 µl of 1-time SDS dye. Next, the tubes were placed in a liquid bath sonicator (Bioruptor; Cosmo Bio, Tokyo, Japan) on 5-s on and off cycles for 10 min, followed by incubation at 95°C for 10 min. Samples were then run on an 8% SDS gel, after which they were transferred onto a PVDF membrane (88518; Thermo Fisher Scientific, Waltham, MA, USA) and blocked in 5% skimmed milk for 1 h. Next, the membrane was incubated overnight at 4°C in primary antibody (anti-mCherry, ab125096, anti-α-tubulin, ab7750; Abcam, Cambridge, MA, USA) prepared in 2.5% milk. This was followed by 1 wash with 1-time PBS with Tween 20 for 5 min, and the membrane was transferred to secondary antibody (sheep anti-mouse; GE Healthcare, Waukesha, WI, USA; NA93IV, po448, goat anti-rabbit, Agilent Technologies, Santa Clara, CA, USA) incubated at room temperature for 3 h. The membrane was washed thrice with 1-time PBS with Tween 20, and the bands were then visualized using a chemifluorescence kit (Western Lightning Plus-ECL; Takara, Kyoto, Japan).
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