The largest database of trusted experimental protocols

Abi 7700 system

Manufactured by Thermo Fisher Scientific
Sourced in United States

The ABI 7700 system is a real-time PCR instrument manufactured by Thermo Fisher Scientific. The ABI 7700 system is designed for quantitative gene expression analysis and detection of nucleic acid sequences.

Automatically generated - may contain errors

19 protocols using abi 7700 system

1

Quantifying VEGF and Gremlin mRNA Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA was extracted via the Trizol (Invitrogen) method, and reverse transcription was performed through the TOYOBO ReverTra Ace-a RT-PCR kit (TOYOBO, Japan). The ABI7700 system (Applied Biosystems) was utilized for real-time quantitative PCR assay. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) primers were forward, 5′-GAAGGTGAAGGTCGGAGTC-3′; reverse, 5′-GAAGATGGTGATGGGATTTC-3′; The primers for VEGF were described [29 (link), 30 (link)]. The primers for gremlin were also described [31 (link)]. The melt curve analysis was performed for analyzing melting temperature. Relative gremlin or VEGF mRNA expression was calculated via the comparative Ct method (2−ΔΔCt) [32 (link)], with GAPDH as the reference gene.
+ Open protocol
+ Expand
2

Quantitative Real-Time PCR for mRNA Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Levels of specific mRNA species were measured by qPCR using the SYBR method following reverse transcription of isolated RNA. Briefly, first strand synthesis and qPCR were performed as described previously.21 (link) qPCR was carried out in the 20-μl volume using a 96-well plate format using the SYBR Green PCR Core Reagents purchased from Applied Biosystems (Foster City, CA, USA). Primer titration was performed with the concentration of 300 nmol L−1. Fluorescence was detected using an ABI 7700 system (PE Applied Biosystems, Carlsbad, CA, USA). Each sample was run in duplicate and in parallel with no template controls. The relative mRNA levels of targeted genes were normalized to ribosomal protein S16 (Rps16, internal control gene) by using a standard curve method. All primers in this study were designed by Primer 3 software (Whitehead Institute for Biomedical Research, Cambridge, MA, USA). Forward and reverse primers were placed in different exons to minimize the effects of possible DNA contamination. These genes are: 11β-HSD1 (Hsd11b1), Cyp2a1, fatty acid binding protein 3 (Fabp3), Hsd3b1, proteolipid protein (Plp), sugar-phosphate/phosphate exchanger family (Slc37). The primers used are described in Supplementary Table 1.
+ Open protocol
+ Expand
3

Influenza Severity Assessment via qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA content was extracted from a set of 10 paired severe and non-severe influenza samples by the reagent of TRIzol (Life Technologies, Carlsbad, CA, USA) as per the manufacturer's protocol guidelines. The reverse transcription process was executed via PrimeScript RT Master Mix (Takara in Tokyo, Japan). The resulting cDNA was amplified using the ABI 7700 system (Applied Biosystems in CA, USA). β-lactin was employed as housekeeping control to evaluate the relative expression levels. It was assessed by utilizing the 2-ΔΔCt method. The following primer sequences were used for the qRT-PCR:

Forward: 5’-CTGCCCAGAACAGATTACAGC-3’,

Reverse: 5’-ACAGTCTCCGTTGTCTCAGG-3’

+ Open protocol
+ Expand
4

Total RNA Extraction and RT-qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total cellular RNA was extracted using TRIzol reagent (Invitrogen) and 5 μg of extracted RNA samples reversely transcribed into cDNA according to the manufacturer's protocol (Superscript III, Invitrogen). The RT-qPCR was performed using the SYBR Green Mix containing Thermo-Start DNA polymerase (Bio-Rad, Hercules, CA) according to the manufacturer's instructions, as regards the ABI7700 System (Applied Biosystems, Foster City, CA), with specific primers used (Supplementary Data Table 2).
+ Open protocol
+ Expand
5

Quantitative Real-Time PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted via the SV total RNA isolation kit (Promega), and reverse transcription was performed through the TOYOBO ReverTra Ace-a RT-PCR kit (TOYOBO, Japan) [12 (link)]. cDNA was mixed with SYBR Green PCR Master Mix. Quantitative real-time PCR (qRT-PCR) was analyzed through the ABI-7700 system (Applied Biosystems). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) primers, forward, 5′-GAAGG TGAAGGTCGGAGTC-3′; reverse, 5′-GAAGATGGTGA TGGGATTTC-3′ [12 (link)]. Gab2 primers, forward, 5′-CGAA GAGAACTATGTCCCTATGC-3′; reverse, 5′-AGGGGCA GGACTGTTCGT-3′ [36 (link)]. After amplification, melt curve analysis was performed to calculate product melting temperature. For normalization, GAPDH was utilized as the reference gene, and ΔΔCt method was applied. The detection of mature miR-302c-3p was through the TaqMan microRNA assay of has-miR-302c-3p (Applied Biosystems, Shanghai, China) (see method in [37 (link)]). Twenty ng of RNA was reverse-transcribed by the TaqMan MicroRNA Reverse Transcription kit (Applied Biosystems) and the looped primer provided by the specific TaqMan microRNA assay.
+ Open protocol
+ Expand
6

Quantitative Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
qRT-PCR for target genes was performed by using a SYBR Green kit (Applied Biosystems, Foster City, CA, USA). PCR was carried out on an ABI 7700 system (Applied Biosystems, Foster City, CA, USA) using the following reaction conditions: 15 min at 95 °C, followed by 40 cycles of 15 s at 95 °C and 60 s at 64 °C. All gene expression levels were normalized to CypA (cytochrome P450 A) expression. The primers are listed in Table 1.
+ Open protocol
+ Expand
7

Quantifying miRNA Expression via qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA was isolated as previously described. Reverse transcription was performed by using a miScriptTM reverse transcription kit (Qiagen, Hilden, Germany). For miRNA expression, qRT-PCR was performed by using a TaqMan PCR kit (Applied Biosystems, Foster City, CA, USA) and an ABI 7700 system (Applied Biosystems, Foster City, CA, USA). The reaction conditions were as follows: 10 min at 95 °C, followed by 45 cycles of 15 s at 95 °C, and 60 s at 60 °C. miRNA expression levels were normalized to U6 expression.
+ Open protocol
+ Expand
8

Quantitative RT-PCR Analysis of Steroid Metabolism

Check if the same lab product or an alternative is used in the 5 most similar protocols
All primers in this study were chosen using a sequence analysis software package (Primer 3, Whitehead Institute for Biomedical Research, Cambridge, MA) following guidelines for internal stability. Forward and reverse primers were in different exons to minimize the effects of possible DNA contamination. The primers for genes of 3β-HSD1 (Hsd3b1) and 11β-HSD1 (Hsd11b1) and 11β-HSD2 (Hsd11b2) were reported in the previous study [18 (link)]. For the internal standard, primers to ribosomal protein S16 (Rps16) were as described previously [18 (link)]. The primers for H6PDH (H6pd) and G6P transporter (Slc37a4) were (forward and reverse pairs): 5'-ACCGGGGACCTAGCTAAAAA-3', 5’-CTCAAGATTATCCCAGAGG-3’ for H6pd and 5’-TTGGACTCCGAAATCTGGAC-3’, 5’-GGTCACTGTTACCCGGAAGA-3’ for Slc37a4. First strand cDNAs, synthesized using total RNA from adult rat testis as described previously [18 (link)], were used as templates for PCR. Real-time PCR (qPCR) was carried out in a 25-μl volume using a 96-well plate format using the SYBR Green PCR Core Reagents purchased from Applied Biosystems (Foster City, CA) by a standard curve method as described previously [18 (link)]. Primer titration was performed and the concentration of 300 nM was selected. Fluorescence was detected on an ABI 7700 system (PE Applied Biosystems). Each sample was run in duplicate. The levels were normalized to Rps16.
+ Open protocol
+ Expand
9

Real-Time Quantitative PCR of Steroidogenic Genes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Briefly, first‐strand synthesis of DNA and RT‐qPCR were performed as previously described.38 qPCR was carried out in a 20 µl volume in a 96‐well plate using the SYBR Green PCR Kit from Applied Biosystems. Primer titration was performed with the concentration of 300 nmol/L. Fluorescence was detected using the ABI 7700 system (PE Applied Biosystems). Each sample was run in duplicate and in parallel with no template controls. The relative mRNA levels of targeted genes were adjusted to housekeeping gene, ribosomal protein S16 (Rps16), as the internal control. Rsp16 in LCs has been used as the internal control in many studies because it showed consistent expression.32, 39 The Ct value was read, and the levels of the target mRNAs were calculated using the standard curve method as previously described.36 All primers in the present study were designed by Primer 3 software (Whitehead Institute for Biomedical Research). Forward and reverse primers were placed in different exons to minimize the effects of possible DNA contamination. These genes are as follows: luteinizing hormone receptor (Lhcgr), scavenger receptor class B member 1 (Scarb1), Star, Cyp11a1, Hsd3b1, Cyp17a1, Hsd17b3, Srd5a1, Akr1c9, insulin‐like 3 (Insl3), sulfotransferase 1A1 (Sult1a1) and cyclin D1 (Ccnd1). The primers were listed in Table S1.
+ Open protocol
+ Expand
10

Quantitative Analysis of SERPINE1 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNAs were isolated from the treated cells or clinical tissues using the TRIzol reagent (cat no. 15596-026; Invitrogen; Thermo Fisher Scentific, Inc.). The purified RNA was used as a template to carry out reverse transcription using the Prime Script RT Master Mix Perfect Real Time kit (Takara Biotechnology Co., Ltd.). Quantitative analysis of target genes was performed using SYBR® GreenER™ qPCR SuperMix (Invitrogen; Thermo Fisher Scientific, Inc.) on an ABI 7700 system (Applied Biosystems; Thermo Fisher Scientific, Inc.) according to the manufacturer's instructions. The thermocycling procedures were as follows: Incubation at 95°C for pre-denaturation for 2 min, followed by 40 cycles with denaturation at 95°C for 22 sec, and annealing at 59°C for 20 sec. The primer sequences used were as follows: SERPINE1 forward, 5′-GCAAGGCACCTCTGAGAACT-3′ and reverse, 5′-GGGTGAGAAAACCACGTTGC-3′. β-actin was utilized for the standardization, and its primer sequences were: Forward, 5′-AGAGCTACGAGCTGCCTGAC-3′ and reverse, 5′-AGCACTGTGTTGGCGTACAG-3′.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!