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26 protocols using rabbit anti laminin

1

Immunostaining and Western Blot Protocols

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The following primary antibodies were used for immunofluorescence staining with their respective dilution: Guinea pig-anti-insulin (Dako no. A0564, 1:500), Rabbit-anti-laminin (Abcam no. ab11575, 1:300), Goatanti-collagen IV (Sigma no. AB769, 1:20), Goat-anti-nidogen-1/entactin (AF2570SP, 1:50). The following primary antibodies were used for western blot with their respective dilution: Rabbit-anti-laminin (Abcam no. ab11575, 1:1000) and Mouse-anti-β-actin (Sigma no. A1978, 1:5000).
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2

Muscle Fiber Type Quantification via Immunofluorescence

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Muscles were isolated and frozen in liquid nitrogen-cooled isopentane. Samples were stored at -80˚C until further processing. Gastrocnemius tissue was cryo-sectioned (8 µm thick) using a cryostat (Leica CM3050S). Cryosections were first stained with rabbit anti-laminin (1:100, Abcam) for 3 hours. After washing with PBS/Tween, sections were stained with secondary goat-anti-rabbit antibodies conjugated to Alexa Fluor-647 (1:1000, Abcam). Sections were incubated overnight at 4°C with a mixture of the following fiber-type specific fluorophore-conjugated primary antibodies (Molecular Probes, Life Technologies): BA-D5 conjugated to Alexa Fluor 350 (1:400; type 1), SC-71 conjugated to Alexa Fluor 488 (1:800; type 2B), and BF-F3 conjugated to Alexa Fluor 594 (1:600; type 2A). A Zeiss Axio Observer A1 microscope was used for imaging. Area quantification and representative pictures were acquired via ZEN 2 software.
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CUBIC Tissue Clearing and Immunostaining

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CUBIC clearing was based on the modified version of the protocol by Susaki et al.37 (link), that utilizes the CUBIC R1a method (unpublished, protocol available at http://cubic.riken.jp/) as previously described by Lloyd-Lewis et al.38 (link). Briefly, fixed samples were placed in R1a for 3 days in a dry incubator at 37 °C, changing to fresh R1a each day. Samples were blocked overnight in blocking buffer (10% normal goat serum in PBS-0.5% Triton-X). Primary antibodies were diluted in blocking buffer for 4 days at 4 °C in the following concentrations: rabbit anti-perilipin 1:50 (Cell Signalling, D418), rabbit anti-collagen IV 1:100 (Abcam, ab6586), rabbit anti-laminin 1:100 (Abcam, ab11575), rabbit anti-HER2 1:100 (Dako, A0485) and the nuclear dye SYTO16 at 1 µM (Life technologies, S7578). Secondary antibody Alexa Fluor 647 goat anti-rabbit (Life Technologies, A21245) was diluted 1:500 and incubated for 2 days at 4 °C.
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Immunofluorescent and Immunoblotting Protocols

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Immunofluorescent stainings for muscle sections and myotubes and immunoblottings were performed with the following antibodies: Rabbit anti‐Msi2 (Millipore, 04‐1069), Mouse anti‐Msi2 (Abnova, H00124540‐M11), Rabbit anti‐HuR (Cell Signaling Technology, 12582), Mouse anti‐HuR (Santa Cruz, sc‐5261), Mouse anti‐Flag tag (Abmart, ab1162), Rabbit anti‐Myc tag (Proteintech, 16286‐1‐AP), Rabbit anti‐Laminin (Abcam, ab11575), Mouse anti‐MyHC (Upstate, 05‐715), Mouse anti‐GAPDH (Protein tech, 60004), Rabbit IgG (Santa Cruz, sc‐2027), Mouse IgG (Santa Cruz, sc‐2025), Rabbit anti c‐Myc agarose beads (Sigma, A7470) and Mouse anti‐Flag agarose beads (Sigma, A2220).
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5

Immunofluorescence Analysis of Muscle Markers

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Sections were fixed with ice-cold 2% paraformaldehyde for 5 min at 4°C, blocked (PBS with 10% NGS and 1.5% BSA), and incubated with primary antibody overnight at 4°C (rabbit anti-dystrophin, Abcam, 1:200 dilution; rabbit anti-laminin, Abcam, 1:80 dilution; mouse anti-Myosin3, DSHB, used neat; mouse anti-Pax-7, DSHB, neat; mouse anti-MyoD, DAKO, 1:500; chicken anti-laminin, Abcam, 1:250; mouse anti-caveolin 1, Abcam, 1:100; and rat anti-F4/80, AbD Serotec, 1:200). The appropriate Alexa secondary antibody (Invitrogen, Carlsbad, CA) was used for detection of each primary antibody, and nuclei were counterstained using 4,6-diamidino-2-phenylindole (DAPI, 1:10000).
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6

3D Culture Immunohistochemistry Protocol

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All immunohistochemistry steps were carried out within a 96 well ultra-low attachment plate while using a custom magnetic plate to hold down 3D cultures during washing and aspiration steps. After being fixed with 4% PFA, all structures were washed with PBS, and then permeabilized with 0.2% Triton-X100 for 10 minutes on an orbital shaker. The structures were then blocked with 10% donkey serum in PBS for 15 minutes and incubated with either mouse anti-collagen type I (Millipore), mouse anti-vimentin (Calbiochem), or rabbit anti-laminin (Abcam) at a concentration of 1:100 in PBS with 1% bovine serum albumin overnight at room temperature (RT) while being shaken. The samples were washed and then incubated at RT with either donkey anti-mouse 555 or donkey anti-rabbit 555 (AlexaFluor 555; Invitrogen) at a concentration of 1:400 in PBS for 1 h. Samples were washed again and then counterstained with using 4′,6-diamidino-2-phenylindole (DAPI; KPL) at 1:1000 in PBS. Samples were washed 4 times and kept in PBS until imaged. Imaging was performed using the NIKON® Eclipse fluorescent upright microscope at 10 × magnification.
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Immunohistochemical Analysis of Muscle Stem Cells

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TA muscles were dissected and post-fixed in 4% PFA for 30min on ice. For immunohistochemistry, whole muscles were embedded in OCT, frozen and cryosectioned onto glass slides. Before, Pax7 staining, slides underwent blocking with 1:10 MOM (Vectors lab) in 10% Goat Serum, 0.2% PBS-TX and then incubated with the following antibodies overnight at 4°C, 1:20 mouse Pax7 (DSHB), 1:500 chicken GFP (Aves) and 1:500 rabbit anti-Laminin (Abcam, ab11575). Bridge 1:500 rat anti-mouse (AbD Serotec, MCA 336) in PBS-10%Goat Serum was applied for 40 min at room temperature, followed by species-specific fluorochrome-conjugated secondary antibodies (Invitrogen) for 1h at room temperature, before being mounted with 100 ng/ml of Dapi (4,6-diamidino-2-phenylindole; Vector Laboratories). Confocal Images were acquired with a Nikon Eclipse Ti epifluorescence microscope equipped with a Q-imaging Micropublisher digital CCD color camera. Images were processed with Nikon NID-elements software.
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8

Immunofluorescence Imaging of Fly Digestive Tract

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Adult female flies were dissected in phosphate-buffered saline (PBS). All whole digestive tract was removed and fixed in PBS and 4% electron microscopic-grade paraformaldehyde (Polysciences, Warrington, PA, USA) for 35 min. Samples were rinsed 3 times with PBS, 4% bovine serum albumin (BSA), and 0.1% Triton X-100 (PBT-BSA) and incubated with the primary antibody overnight at 4 °C and with the secondary antibody for 2 h at room temperature. Finally, the samples were rinsed 3 times with PBT-BSA and mounted in DAPI-containing Vectashield (Vector Laboratories, Burlingame, CA, USA). All the steps were performed without mechanical agitation. Primary antibodies were goat anti-GFP (1:500; Abcam, Cambridge, UK, ab6673) and rabbit anti-Laminin (1:500, Abcam, Cambridge, UK, ab47651). Secondary antibodies were from Invitrogen (Carlsbad, CA, USA). Phalloidin (Sigma-Aldrich, Merck Life Science UK Limited, Dorset, UK; P1951) was used at 5 µg/mL. Confocal image were acquired with a Zeiss LSM 880. Images were analysed with the Fiji software (National Institutes of Health (NIH) Bethesda, MD) and assembled into figures using Fiji version 1.0, Adobe Photoshop CC 2017 software (Adobe, San Jose, CA, USA), and Microsoft Powerpoint.
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9

Beagle Mandible Histological Analysis

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Beagles were sacrificed after 12 weeks, and the mandibles were harvested and fixed with 4% paraformaldehyde. Cone-beam computed tomography (CBCT, Vatech, South Korea) was used to observe the harvested samples. All samples were then demineralized for 1 month, embedded, and sectioned into 5-μm-thick sections for histological analyses according to the manufacturer’s recommended protocols. As mentioned earlier, the prepared sections (5 μm) were also stained with H&E stain. For immunohistochemistry analysis, the primary antibodies used in this study were as follows: rabbit anti-DSPP (1:100 dilution; Abcam, MA, United States), rabbit anti-collagen type I (Col-1, 1:200 dilution, Bioss, Inc., Woburn, MA, United States), rabbit anti-laminin (1:50 dilution, Abcam, MA, United States), rabbit anti-DMP-1 (1:50 dilution, Invitrogen, Eugene, OR, United States).
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10

Immunostaining of Bone Tissue Sections

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Freshly dissected bones were fixed in 4% paraformaldehyde overnight followed by 3-day decalcification in 10% EDTA. Bones were sectioned (5μm for thin sections and 50μm for thick sections) using the CryoJane tape-transfer system (Instrumedics, Ann Arbor, MI). Sections were blocked in PBS with 10% horse serum for 1 hour and then stained overnight with chicken-anti-GFP (Aves, Tigard, OR, 1:1000), anti-CD41-APC (eBioscience, eBioMWReg30, 1:200), goat-anti-c-kit (R&D, 1:400), rabbit-anti-perilipin (Sigma, 1:1000) and/or rabbit-anti-laminin (Abcam, Cambridge, MA, 1:400) antibodies. Donkey-anti-goat Alexa Fluor 647, donkey-anti-chicken Alexa Fluor 488 and/or Donkey-anti-goat Alexa Fluor 647 were used as secondary antibodies (Life Technologies, 1:400). Slides were mounted with anti-fade prolong gold (Life Technologies) and images were acquired with a Zeiss LSM780 confocal microscope.
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