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22 protocols using cobas 8000 modular

1

Standardized Blood Biomarker Collection

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Blood sampling was performed according to the same protocol for all participants of the study. Blood was collected in ethylenediaminetetraacetic acid tubes and stored on room temperature. Within 1 h after sampling, samples were centrifuged, and aliquots of serum were frozen at −80°C until batch analysis. Isolation and storage of samples occurred between June 2015 and January 2020. Albumin (g/L) was determined with a colorimetric assay using a Roche COBAS 8000 Modular (Roche Diagnostics, Basel, Switzerland). Sex hormone-binding globulin (SHBG, nmol/L), testosterone (nmol/L), and E2 (pmol/L) were determined using the ECLIA immune assay on the e602 module of the Roche COBAS 8000 Modular (Roche Diagnostics). fT levels were calculated according to a previously published method [20 (link)].
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2

Creatinine Levels Analysis in Serum

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Serum was used to analyze creatinine levels using an automatic biochemistry analyzer (Roche Cobas 8000 modular analyzer Series, Roche Diagnostics GmbH, Mannheim, Germany).
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3

Metabolic Biomarker Evaluation Protocol

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Serum TG, TCH, HDL-c, and LDL-c were determined by Roche Cobas 8000 modular analyzer series (Roche Diagnostics, Basel, Switzerland). Serum insulin, leptin and adiponectin levels were analyzed by immunoassay using ELISA kits (Shanghai Lengton Biological Technology Co., Ltd., Shanghai, China) according to the manufacturer’s protocols. HOMA-IR was assessed according to a previously described method and as follows: HOMA-IR = serum glucose level (mmol/L) × serum insulin level (mU/L)/22.5 [34 (link)].
Liver and epididymal white adipose tissue samples were fixed with 4% formalin, stained with hematoxylin and eosin (H&E) and then examined under an Olympus microscope equipped with a CCD camera (DP20, Tokyo, Japan) using the DP2-BSW image analysis software system (Olympus, Tokyo, Japan). For measurement of the relative adipocyte size, adipocytes were randomly chosen and used for measurements and calculations.
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4

Intracardial Biomarker Profiling

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Intracardial blood samples were centrifuged to separate the serum and frozen at −80 °C for the analysis of biomarkers and the acute phase response. The serum samples were thawed and centrifuged for 10 min at 2,000 g at room temperature. The supernatant was then used for the analyses of aspartate aminotransferase (AST), alanine aminotransferase (ALT), cholesterol, triglycerides and albumin concentrations, performed on a Cobas 8000 modular analyser (Roche, USA).
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5

Clinical Data Analysis of Hospital Admissions

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Clinical and laboratory data during hospital admission were extracted from the electronic medical records, including age, sex, weight, body temperature, respiratory rate, heart rate, systolic blood pressure (SBP), diastolic blood pressure (DBP), the length of hospital stay, PCT, CRP, alanine aminotransferase (ALT), aspartate aminotransferase (AST), and albumin (ALB), creatinine (CREA) and urea nitrogen (UREA). The PCT levels were detected using Cobas® 8000 modular analyzer (Roche Diagnostics, Switzerland). The CRP levels were detected using a latex-enhanced immunoturbidimetric assay on an UPPER analyzer (Ultrasensitive CRP kit, Upper Bio-Tech, China). The ALT, AST, ALB, CREA, and UREA levels were recorded by the conventional clinical analytical approach using an automatic Beckman biochemical analyzer (Beckman Coulter, Brea, California, USA). The total white blood cells, neutrophils, lymphocytes, and platelets were recorded using an automated blood cell counter (Sysmex Corporation, Japan). In our data analysis, PCT levels>100 ng/mL or <0.02 ng/mL were defined as 101 ng/mL and 0.01 ng/mL, respectively, and CRP levels <0.8 mg/L were defined as 0.7 mg/L. The LCR was calculated as the total lymphocyte count (×109 cells/L)/CRP (mg/L).
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6

Biomarker Profiling of Cholesterol, Inflammation, and Hormones

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On the study day, total cholesterol, triglycerides, and high-density lipoprotein cholesterol were measured on the Roche Cobas 8000 Modular. Approximately 2 weeks before the study day, fasting serum was withdrawn to screen for baseline factors. Dehydroepiandrosterone sulfate (catalog #L2KDS2) was measured using a solid-phase competitive chemiluminescent enzyme immunoassay with an Immulite 2000 XPi system from Siemens Healthcare diagnostics (The Hague, The Netherlands). High-sensitivity C-reactive protein (hsCRP) (catalog #04628918190) was determined by a particle-enhanced turbidimetric assay using Cobas Integra 800 from Roche Diagnostics. Interleukin 6 (catalog #SS600B) and TNF-α (catalog #SSTA00D) were measured by ELISA from R&D Systems. All measurements were performed at the Department of Clinical Chemistry and Laboratory Medicine of the Leiden University Medical Center in The Netherlands.
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7

Saliva Cortisol Sampling and Detection

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Collection method: A sterile cotton ball was swabbed inside the mouth for at least 2 min and then placed in a 20-mL sterile syringe. The saliva (2 mL) was transferred to a test tube by pressing the plunger of the syringe. The saliva was centrifuged for 10 min at 3000 rpm, and 1 mL of the sample was stored at −20°C for later analysis. We commissioned Xinjiang Di’An Testing Company to analyze the samples. The chemiluminescence method was used for detection using a Cobas® 8000 modular analyzer (Roche Diagnostics, USA). A cortisol detection kit was also used.
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8

Plasma Lipid and CRP Evaluation in Rats

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At the time of harvesting the cerebral vessels, the rat was placed in an anesthetic chamber containing 5% isoflurance and allowed to spontaneously breathe. Deep anesthesia was confirmed using the hind limb and tail pinch test. The rat was euthanized by decapitation using a rodent guillotine. Trunk blood was collected into heparinized centrifuge tubes, immediately inverted to mix the blood and centrifuged at 2000 g. The plasma was carefully aspirated and stored in 100 μl aliquots at −20°C. Total cholesterol, high‐density lipoprotein (HDL), and C‐reactive protein (CRP) were measured using a Cobas 8000 modular analyzer (Roche).
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9

Liver Injury Assessment Protocol

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Blood was collected in heparin-anticoagulated microtainers (BD Biosciences, Franklin Lakes, NJ) and centrifuged for 10 min at 10,000 × g. ALT was measured by the Department of Clinical Chemistry using a Cobas 8000 modular analyzer (Roche, Basel, Switzerland). After exsanguination, part of the left liver lobe was fixed in 10% (vol/vol) formalin solution (J.T. Baker, Center Valley, PA) for 2 to 4 days, after which the samples were dehydrated and embedded in paraffin, cut to 5 µm-thick sections, and stained with hematoxylin and eosin (H&E). Confluent necrosis was scored in a blinded fashion by an experienced hepatopathologist (J.V.).
For transcriptomic analysis, 30 mg of left liver lobe tissue was stored in RNAlater (Qiagen, Venlo, the Netherlands) overnight at 4 ºC and subsequently at –20 ºC until RNA isolation.
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10

Kidney Injury Biomarker Assessment

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Creatinine was assessed using the Jaffé method (Cobas 8000 modular, ROCHE Diagnostics, Indianapolis, IN, USA), CK using the UV test and myoglobin using the electrochemiluminescence method.
Urinary neutrophil gelatinase-associated lipocalin (UNGAL), urinary interleukin 18 (IL-18), calbindin, microalbuminuria (μalbum), trefoil factor-3 (TFF3) and β-2 microglobulin (β2M) were assessed with a Luminex xMAP (Bio-plex PRO II Wash Station, MAG-PIX, Millipore Corporation, Darmstadt, Germany).
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