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14 protocols using ab180630

1

Histological Analysis of Mouse Lung Tissues

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For hematoxylin and eosin (H&E) staining, the mouse lung tissues were fixed with 4% paraformaldehyde for 24 h. The paraffin-embedded tissues were cut in 5 µm thick sections. H&E staining was employed to assess the alterations in morphology in these tissues using an optical microscope, and different fields were subsequently photographed.
For immunohistochemistry (IHC) analysis, paraffin-embedded tumor and lung tissues were deparaffinized and rehydrated as described [17 (link)]. After antigen retrieval and blocking, sections were incubated with anti-CD31 (1:50, ab182981, Abcam, Cambridge, UK), anti-TIMP2 (1:200, ab180630, Abcam) or anti-TIMP3 (1:100, ab213063, Abcam) antibody at 4 °C overnight, followed by the incubation with secondary antibody. The immunoreactivity was visualized by using DAB substrate (Thermo Fisher Scientific).
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2

Western Blot Analysis of Protein Expression

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The western blot assays were performed as described in a previous article [23 (link)]. Total proteins of cells and tissues were collected and separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and then bound to PVDF membrane (Reno, Hangzhou, China). Following this step, 5% non-fat milk was used to seal the membranes for 1.5 hours, and the membranes were hybridized to anti-α1-AT (Abcam, ab207303, 1: 1200), anti-E-cadherin (Abcam, ab15148, 1: 1000), anti-TIMP-2 (Abcam, ab180630, 1: 1000), anti-MTA1 (Abcam, ab71153, 1: 800), anti-MMP2 (Abcam, ab92536, 1: 1500), anti-phosphorylated-mammalian target of rapamycin (p-mTOR) (Invitrogen, 710216, 1;800), anti-mTOR (Invitrogen, 44-1125G, 1: 1000), anti-phosphorylated-protein kinase B (p-Akt) (Invitrogen, 44-623G, 1: 1200), anti-Akt (Invitrogen, 44-623G, 1: 1600), anti-phosphorylated-phosphatidylinositol 3 kinase (p-PI3K) (Invitrogen, PA5-12799, 1: 1600), anti-PI3K (Invitrogen, MA5-17149, 1: 1000), anti-β-actin (R&D, MAB8969, 1: 2000). After hybridization, the membrane was soaked in corresponding secondary antibodies (HRP mouse ant-goat IgG, Invitrogen, BA1074, 1: 7000; HRP mouse anti-rabbit, Invitrogen, BA1034, 1: 7000) at 37°C for 60 minutes. The protein was detected by ECL detection reagent (Taixin, Beijing, China).
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3

Protein Profiling of Cell Signaling

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Total proteins of the tissues and cells were harvested and lysed with an enhanced RIPA lysis buffer (Leagene, Beijing, China). Proteins were separated by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (12%SDS-PAGE). Then, the protein was bound to the PVDF membrane (Hongda; Zhuzhou, Guangdong China). Subsequently, 5% skim milk was used to seal the membranes for 1.5 h, and membranes then were incubated with anti-STOML2 (Abcam, EP18708, 1: 1000), anti-E-cadherin (Abcam, ab15148, 1: 1200), anti-tissue inhibitor of metalloproteinases2 (TIMP2) (Abcam, ab180630, 1: 800), anti-metastatic tumor antigen 1 (MTA1) (Abcam, ab71153, 1: 1000), anti-matrix metalloproteinase-2 (MMP-2) (Invitrogen, MA1-772, 1: 1200), anti-MMP-9 (Invitrogen, PA5-13199, 1: 1000), anti-NF-κB (Abcam, E379, 1: 800), anti-IκB (CST, 9242S, 1: 1000), and anti-β-actin (R&D, MAB8969, 1: 2000) at 4°C in a refrigerator for 24 h. On the next day, the membranes were incubated with the secondary antibodies (Goat anti-mouse IgG, Abcam, ab7064, 1: 8000; Rabbit anti-mouse IgG, CST, #58802, 1: 7000; Mouse anti-rabbit IgG, CST, #3678, 1: 8000) at 37°C for 60 min. Proteins were analyzed by use of the iBright™ imaging system (A32749, Thermo, Shanghai, China).
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4

Western Blotting for Cellular Signaling

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Western blotting was performed with the SDS-PAGE electrophoresis system. Adherent cells or adipose tissue extracts were prepared and transferred to PVDF membranes. The following primary antibodies were used: anti-GAPDH (ap0063, Bioworld), anti-Col15α1 (ab150463, Abcam), anti-Caspase-9 (ab32539, Abcam), anti-Cleaved Caspase-9 (bs7070, Bioworld), anti-Caspase-3 (Bs6428, Bioworld), anti-Cleaved Caspase-3 (bs7004, Bioworld), anti-Bcl2 (bs1511, Bioworld), anti-Bax (ab32503, Abcam), anti-AMPK (ab32047, Abcam), anti-pAMPK (ab133448, Abcam), anti-mTOR (ab87540, Abcam), anti-pmTORC1Ser2448 (ab109268, Abcam), anti-Akt (ab8805, Abcam), anti-pAktSer473 (ab18206, Abcam), anti-S6K1 (ab32529, Abcam), anti-pERK1/2 (ab201015, Abcam), anti-ERK1/2 (ab17942, Abcam), anti-pS6K1Thr389 (ab2571, Abcam), anti-Collagen I (ab34710, Abcam), anti-Collagen VI (ab6588, Abcam), anti-Fibronectin (ab2413, Abcam), anti-MMP2 (ab92536, Abcam), anti-MMP9 (ab38898, Abcam), anti-TIMP1 (WL02342, Wanleibio), anti-TIMP2 (ab180630, Abcam), anti-FGFR1 (ab31324, Abcam), anti-pFGFR1Tyr653/Tyr654 (GTX133526, GeneTex), anti-TGFβ1 (WL03092, Wanleibio). Horseradish peroxidase anti-rabbit or anti-goat (Sigma–Aldrich) were used as secondary antibodies.
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5

Western Blot Analysis of Signaling Proteins

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Tissues or cells were lysed using RIPA Lysis Reagent (Boster, China) for 20 min, and then centrifuged at 10 000×g for 10 min on ice. Proteins in supernatant were harvested and quantified by BCA protein assay kit (Thermo Fisher, USA). Subsequently, 20 μg total proteins were subjected to each lane and separated by 12% SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes (Thermo Fisher, USA). After that, the membrane was blocked with 5% non-fat dry milk for 1 h at 37°C and probed with specific primary antibodies overnight at 4°C, including: rabbit anti-MON1B (Novus, NBP1-92131, 1: 2000), anti-MMP2 (Abcam, ab92536, 1: 1000), anti-MMP9 (Abcam, ab38898, 1: 1000), anti-TIMP-2 (Abcam, ab180630, 1: 1000), anti-MTA-1 (Abcam, ab, 1: 1000), anti-NF-κB (Abcam, ab16502, 1: 1000), anti-IκB (Abcam, ab32518, 1: 1000), anti-CXCR-4 (Abcam, ab181020, 1: 1000), and anti-β-actin (Abcam, ab8227, 1: 2000). Subsequently, the membranes were incubated with Goat Anti-Rabbit IgG H&L (HRP) secondary antibody (Abcam, ab6721, 1: 5000) for 1 h at 37°C. The immunoblots were visualized by enhanced chemiluminescence (ECL) detection reagents (Thermo Fisher, USA). Digital images of immunoreactive bands were analyzed by Bio-Rad ChemiDoc™ XRS+ System with Image Lab™ Software #1708265 (Bio-Rad, USA).
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6

Western Blot Analysis of EMT Markers

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Treated cells were lysed in RIPA buffer supplemented with phenylmethylsulphonyl fluoride (Beyotime Institute of Biotechnology, Haimen, China). The BCA method was used to assess protein concentration. Proteins were separated by 12.5% SDS-PAGE and transferred to PVDF membrane and immunoblotted with the following antibodies: anti-SMAD2 (1:1000, ab33875, Abcam, Cambridge, MA, USA), anti-Snail (1:1000, Abcam, ab53519), anti-E-cadherin 1:1000, (1:1000, Abcam, ab231303), anti-MMP-2 (1:1000, Abcam, ab97779), anti-MMP9 (1:1000, Abcam, ab137867), anti-TIMP2 (Abcam, ab180630), and anti-GAPDH (1:1000, Abcam, ab181603). After rinsed with TBST, the membranes were incubated with HRP-conjugated secondary antibody (1:1,000; cat. no. A0208; Beyotime Institute of Biotechnology), developed with an ehanced chemiluminescence regent (GE Healthcare Bio-Sciences, Pittsburgh, PA, USA) and visualized by Image Lab software (Bio-Rad Laboratories, Hercules, CA, USA). The experiments were performed in triplicate.
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7

Western Blot Analysis of IGFBP7 and TIMP2

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Protein was obtained from tissues using a chilled lysis buffer containing protease inhibitor and phosphatase inhibitor. Lysates were centrifuged at 12,000 g for 10 min at 4°C. Equal amounts of sample proteins (40 μg–80 μg) mixed with loading buffer were separated in 10% (wt/vol) SDS/PAGE gels. Afterward, proteins were transferred from SDS/PAGE gels to 0.45 μm polyvinylidene fluoride membranes. Unspecific antibody binding was prevented by blocking for 1 h at room temperature with 5% nonfat milk powder in triethanolamine-buffered saline/Tween 20 (TBST). Blots were incubated with primary antibodies overnight at 4°C. The primary antibodies used in this study were rabbit anti-IGFBP7 (abs136651, Absin, 1:1,000), rabbit anti-TIMP2 (ab180630, Abcam, 1:1,000), and mouse anti-β-actin (100166-MM10, Sino Biological, 1:5,000). After three times of washing in TBST, the blots were incubated with HRP-conjugated goat anti-rabbit antibody (A0208, Beyotime) or HRP-conjugated goat anti-mouse antibody (A0216, Beyotime) diluted 1:5,000 in TBST for 1 h. Chemiluminescent signal was detected using chemiluminescence substrate (Tanon, Shanghai). After chemiluminescent detection, β-actin was performed on the same blots as housekeeping protein. The density of the bands was measured using ImageJ software and normalized to healthy controls.
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8

Western Blot Analysis of Cell Cycle Regulators

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Cells were lysed in the lysis buffer and the protein concentration was measured using the BCA protein assay kit (Thermo Fisher Scientific). The 10 μg proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto the polyvinylidene fluoride (PVDF) membranes (Millipore). The membranes were blocked with 5% skim milk for 2 h and incubated with rabbit anti-MYBL2 (1:1000, ab76009, Abcam, Cambridge, UK), cyclin A2 (1:10000, ab32386, Abcam, Cambridge, UK), cyclin B1 (1:20000, ab32053). Abcam, Cambridge, UK), GAPDH (1:10000, ab180630, Abcam, UK) and Plk1 (1:1000, ab155095, Abcam, Cambridge, UK) overnight at 4°C. Then the membranes were cultured with secondary antibody goat anti-rabbit IgG H&L (ab205718, Abcam, Cambridge, UK) for 1 h at room temperature. Finally, the electrochemiluminescence kit (ECL; Pierce Biotechnology) was used for protein development.
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9

Inhibition of PI3K/Akt Pathway in Cellular Processes

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The phosphatidylinositol 3-kinase (PI3K) inhibitor LY294002 and Akt agonist SC79 were purchased from Selleck (Houston, United States). Rabbit monoclonal anti-LGALS14 (ab150427), rabbit monoclonal anti-VE-cadherin (ab33168), rabbit monoclonal anti-N-cadherin (ab76011), mouse monoclonal anti-MMP-9 (ab119906), rabbit monoclonal anti-TIMP1 (ab109125), rabbit monoclonal anti-MMP-2 (ab92536), rabbit monoclonal anti-TIMP-2 (ab180630), rabbit monoclonal anti-GAPDH (ab181602), rabbit monoclonal anti-cytokeratin 7 (ab181598), and mouse monoclonal anti-HLA G (ab52455) antibodies were purchased from Abcam (Cambridge, United Kingdom). Rabbit monoclonal anti-p-Akt (Ser473) (9271) and rabbit monoclonal anti-Akt (9272) antibodies were purchased from Cell Signaling Technology (Danvers, United States). Goat anti-mouse IgG (H + L) HRP and goat anti-rabbit IgG (H + L) HRP secondary antibodies were purchased from MultiSciences Biotech Co. (Hangzhou, China).
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10

Quantification of Angiogenesis-Related Proteins

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The HaCat cells cultured with or without naringin were harvested and total cell protein was extracted using whole cell lysis buffer. The protein concentrations were determined by the Bradford method (Bio-Rad, CA, USA). Samples with an equal amount of protein were subjected to 8–15% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto a polyvinylidene difluoride (PVDF) (Millipore, Bedford, MA, USA) membrane. The membrane was incubated at room temperature in blocking solution (5% nonfat milk) for 1 h followed by incubation for 2 h in blocking solution containing an appropriate dilution of anti-MMP2 (ab86607, abcam), MMP-9 (ab76003, abcam), MMP-14 (ab51074, abcam), TIMP-1 (MAB3300, millipore), TIMP-2 (ab180630, abcam), VEGF-A (ab46154, abcam), VEGF-B(ab185696, abcam), VEGF-C (ab191274, abcam), VEGF-D (ab155288, abcam), VEGF-R1(ab32152, abcam), VEGF-R2 (9698, cell Signaling), VEGF-R3 (2485, cell Signaling), and β actin (E-AB-20058, Elabscience). After washing, blots were then probed with appropriate secondary horseradish peroxidase (HRP)-conjugated secondary antibodies (Jackson ImmunoResearch, West Grove, PA) and detected by an ECL detection system (Millipore). β-actin served as internal control.
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