The largest database of trusted experimental protocols

25 protocols using fw4000

1

Cell Viability Assay with Fluorescent Dyes

Check if the same lab product or an alternative is used in the 5 most similar protocols
To analyse cell viability a mixed solution of Hoechst 33342 (Invitrogen), fluorescein diacetate (FDA, Sigma, 100 μg/ml, Sigma) and PI (120 μg/ml, Invitrogen) was added to the medium and incubated for up to 10 min at 37℃. Upon treatment cells were analysed by conventional epifluorescence microscopy (Leica DM IRE2) and images were acquired using the Leica FW4000 software. Image analysis and cell quantification were performed with ImageJ (Wayne Rasband) or Photoshop CS3 (Adobe). At least five images were analysed per condition and time point.
+ Open protocol
+ Expand
2

Fluorescence Microscopy of Transgenic Worms

Check if the same lab product or an alternative is used in the 5 most similar protocols
For fluorescence microscopy of transgenic worms, worms were anesthetized with 50 mM sodium azide on NG agar plates and were analysed using a Leica S6E dissecting microsope. Immunostained 293T cells were analysed using a Leica 6000B digital microscope. Images were acquired using Leica FW4000 and AF6000 software.
+ Open protocol
+ Expand
3

Immunofluorescence Analysis of 53BP1

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were collected by trypsinization and 5 × 104 cells were replated onto coverslips. The cells were fixed with cold methanol for 10 min on ice followed by washing with 1× PBS. Then, the primary antibodies diluted in TBS-DT (20 mM Tris-HCl, pH 7.6, 137 mM NaCl, 0.1% Tween 20, 125 µg/mL ampicillin, 5% skim milk) were treated for 2 h at 37 °C, followed by the Alexa Fluor-labeled secondary antibodies for 1 h at 37 ˚C. Nuclei were counterstained with 1 μg/mL DAPI. The antibodies used was anti-53BP1 (A300-272A, BioLegend, San Diego, CA, USA), and Alexa Fluor 555-labed anti-rabbit IgG (A21428, Thermo Fisher Scientific, Waltham, MA, USA). Images were captured by fluorescence microscope (DM6000B, Leica, Tokyo, Japan) and analyzed by FW4000 (Leica, Tokyo, Japan).
+ Open protocol
+ Expand
4

Immunofluorescence of Myoblast Differentiation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence has been performed on proliferating myoblasts at early stage, on senescent myoblasts at late stage and on myotubes obtained from myoblasts at early and late stages. Myoblast and myotube (T5) cultures were fixed in 4% paraformaldehyde for 15 min at 4°C. After fixation, cells were washed several times in PBS and then permeabilized in 0.4% Triton X-100 in PBS for 5 min. After washing in PBS, non-specific binding sites were blocked with NGS (Dako-Cytomation) at a dilution 1:20 in PBS+2% BSA for 20 min at room temperature. Myoblast and myotubes were then incubated respectively with a primary antibody mouse monoclonal anti-desmin (CD33, Dako, 1:100 in PBS+2%BSA) and a mouse monoclonal anti MHC-fast (Sigma-Aldrich, 1:600 in PBS+2%BSA) for 1 h at room temperature. After washing in PBS 3x5 min, cells were incubated for 1 h at room temperature with secondary antibodies (goat anti mouse Alexa 488-labeled; Molecular Probes, Eugene, OR, USA; 1:400 in PBS+2%BSA). After washing in PBS 3x5 min, nuclei were stained with 165 nM 4,6-diamidino-2-phenylindole (DAPI). Cells were finally mounted with Mowiol and examined using a fluorescence microscope (LEICA FW4000).
+ Open protocol
+ Expand
5

Immunofluorescence and Autophagy Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Differentiated EBs and monolayer cultures were fixed with 4% paraformaldehyde (PFA) and permeabilized with 0.1% Triton X-100 at RT. The following primary antibodies were used: MF20 (1 : 50, Developmental Studies Hybridoma Bank); βIIITubulin (1 : 400, Sigma-Aldrich). After washing in 0.5% Tween-1 × PBS, cells were incubated with secondary antibodies (1 : 200, Alexa Fluor, Molecular Probes Inc., Life Technologies).
For autophagy detection, cytospin samples (see above) were stained with LysoTracker Red DND-99 dye. Briefly, cells (50 000 cells/spot) were washed with PBS 1 × , stained with LysoTracker Red DND-99 dye (Molecular Probes Inc.) for 1 min at room temperature. Cells were gently washed and fixed in 4% PFA for 30 min, washed three times with PBS, and stained with membrane stain WGA-Alexa Fluor 488 Conjugate (Invitrogen) following the manufacturer's instructions. Cell nuclei were counterstained with Hoechst 33342 (Invitrogen). Images were obtained using the DMI6000B microscope and the DFC 350FX B/W digital camera (Leica, Solms, Germany). Leica FW4000 and AF6000 software were used for image acquisition/elaboration. Confocal images were acquired at × 63 magnification on a LSM710 confocal fluorescence microscope (Carl Zeiss Inc., Jena, Germany) using the ZEN 2008 software (Carl Zeiss Inc.).
+ Open protocol
+ Expand
6

Islet Viability Assessment via H2O2 Stress

Check if the same lab product or an alternative is used in the 5 most similar protocols
Twenty islets maintained in cell RPMI supplemented with 10 % SVF were treated during 6 hrs by 100 μM H2O2, then washed by centrifugation (500 g, 5 min.) and incubated with fluorescein diacetate (0.67 μM) and propidium iodide (4 μM) before observation by fluorescent microscopy (Leica FW 4000, ×20 objective). Nine random fields were analysed per sample. Fluorescence intensity was analysed using the ImageJ software. Results are expressed as green intensity/islet surface unit. Data were obtained from four different islet preparations.
+ Open protocol
+ Expand
7

PKH26-Labeled Platelet Microparticle Capture

Check if the same lab product or an alternative is used in the 5 most similar protocols
SMP (30‐60 nmol/L) was stained by 2 μmol/L of the red fluorescent PKH26 lipid probe (Sigma). PKH26‐stained SMPs were washed twice by centrifugation (14 000 g, 60 minutes) in HBSS at 4°C before incubation with P1ECs during 6‐48 hours. Capture of PKH26‐stained SMPs by target ECs was assessed after three washings by fluorescent microscopy (Leica FW 4000) and quantified by flow cytometry. The efficacy of the SMP capture was expressed as the percentage of red fluorescent ECs (Guava Easy Cyte Plus System, Millipore).
+ Open protocol
+ Expand
8

Live-cell fluorescence microscopy of P2X7R

Check if the same lab product or an alternative is used in the 5 most similar protocols
Video fluorescence microscopy measurements were carried out using a Leica FW4000 and 40× objective (Platform of Quantitative Imagery, Faculté de Pharmacie, Université de Strasbourg). Acquisition of fluorescence images was carried out at an interval of every 5 s using the software MetaMorph (Molecular Devices). The experiment was divided into two acquisition periods; an initial acquisition of 10 min where cells were incubated in NES/YO-PRO-1 solution where YO-PRO-1 is at a concentration of 10 μM (iodide salt, Thermo Fischer). The solution was then gently exchanged for a NES/YO-PRO-1 solution containing BzATP and inhibitors (or BzATP alone) for a second acquisition period of 15 min. This second solution containing inhibitors was prepared immediately prior to application, and concentrations used are the same as those used for electrophysiology. Cells were maintained at 37 °C during measurements.
Confocal imaging was captured with Leica SPE using oil immersion objective: 63×, Numerical Aperture 1.4. Excitation (λexc) and emission (λem) wavelengths were as follows: Hoechst (λexc = 364 nm; λem = 430–481 nm), Alexa 488 (λexc = 495 nm; λem = 500–600 nm) and mScarlet (λexc = 561 nm; λem = 648–708 nm).
+ Open protocol
+ Expand
9

Retrograde Tracing of Rat Rectum Innervation

Check if the same lab product or an alternative is used in the 5 most similar protocols
With the rats (Group C, n = 10) lying supine under anesthesia, a median incision of the hypogastrium was made to expose the anal canal. CB-HRP (10 to 15 μl, 3 μg/μl) (Sigma, St Louise, MO, USA) was slowly injected into the anal canal wall using a micro-syringe into three sites equally distant from one to another. The needle was retained for 15 min and medical adhesive was applied to seal off the needle holes. The rats were kept alive for 48 h. Then, the rats were perfused transcardially with phosphate buffered saline (PBS), followed by buffered 4% paraformaldehyde. Spinal cords and bilateral dorsal root ganglia from T12 to S4 were removed and placed in PBS containing 20% sucrose at 4 °C for 24 hours. Forty-μm sections were obtained using a cryostat-microtome. HRP-positive neurons were shown using tetramethylbenzidine-sodium tungstate (TMB-ST) and observed using an Olympus BH-2 microscope equipped with brightfield and darkfield optics (Olympus, Tokyo, Japan). The proportions of CB-HRP-positive neurons in different segmental dorsal root ganglia were calculated using the Leica FW4000 image analysis system using one slide per animal.
CB-HRP positive neurons and afferent fibers of rat rectum (Group D, n = 10) from different spinal segments were analyzed using the same methodology as for the anal canal.
+ Open protocol
+ Expand
10

Quantitative Fluorescence Microscopy of Purinergic Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Video fluorescence microscopy measurements were carried out using a Leica FW4000 and 40x objective (Platform of Quantitative Imagery, Faculté de Pharmacie, Université de Strasbourg). Acquisition of fluorescence images was carried out at an interval of every 5 seconds using the software MetaMorph (Molecular Devices). The experiment was divided into two acquisition periods; an initial acquisition of 10 minutes where cells were incubated in NES/YO-PRO-1 solution where YO-PRO-1 is at a concentration of 10 µM (iodide salt, Thermo Fischer). The solution was then gently exchanged for a NES/YO-PRO-1 solution containing BzATP and inhibitors (or BzATP alone) for a second acquisition period of 15 minutes. This second solution containing inhibitors was prepared immediately prior to application, and concentrations used are the same as those used for electrophysiology. Cells were maintained at 37°C during measurements.
Confocal imaging was captured with Leica SPE using oil immersion objective: 63x, Numerical Aperture 1.4. Excitation (lexc) and emission (lem) wavelengths were as follows: Hoechst (lexc = 364 nm; lem = 430-481 nm), Alexa 488 (lexc = 495 nm; lem = 500-600 nm) and mScarlet (lexc = 561 nm; lem = 648-708 nm).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!