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6 protocols using anti annexin 5 pe

1

Characterization of Murine Leukemic Lineages

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Analyses of leukemic lineages and apoptosis were performed as described earlier [6 (link)]. Briefly, for analysis of lineages and LICs, bone marrow cells were stained with anti-mouse Mac-1-PE, anti-mouse Gr-1-APC, anti-mouse CD3e-PE, anti-mouse B220-PE, and anti-mouse c-Kit-APC monoclonal antibodies (eBioscience, USA). For detection of CD274 expression in Mac-1+/c-Kit+ LICs of murine AML model, anti-mouse CD274-biotin and streptavidin-PE (secondary antibody) were used (eBioscience, USA). Cell cycle status was determined in purified Mac-1+/c-Kit+ LICs with Pyronin Y and Hoeschst 33342 staining (Sigma, USA) as previously described [25 (link)]. Apoptosis analysis was conducted in purified Mac-1+/c-Kit+ LICs with anti-Annexin V-PE and 7-AAD staining (BD Pharmingen, USA) according to the manufacturer’s instructions.
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2

Immunodominant Peptide Synthesis and Antibody Purification

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The immunodominant RNEU420-429 (PDSLRDLSVF) peptide and LCMV NP118-126 (RPQASGVYM) negative control peptide were synthesized at >95% purity in the Johns Hopkins Biosynthesis and Sequencing Facility. The anti-OX40 antibody was produced from the OX86 hybridoma, a gift from the Weinberg lab. The hybridoma was grown in protein-free hybridoma media (Gibco) and purified over a protein G column (BD Pharmingen). Purified rat IgG was used as an irrelevant control (Jackson Laboratories). Antibodies for flow cytometry were: anti-DR5-PE, anti-CD24-APC, anti-AnnexinV-Pacific Blue, anti-Thy1.2-PerCP, anti-Thy1.2-Pacific Blue, anti-CD8-FITC, anti-Bcl-2-APC (Biolegend); anti-FasL-PerCP-efluor710 (eBioscience); anti-AnnexinV-PE, anti-Thy1.2-FITC, anti-IFNγ-PE, anti-TNFα-APC, and purified anti-Fas (BD Pharmingen); anti-Survivin-PE (Cell Signaling Technology); purified anti-CD24 and polyclonal rabbit IgG (Santa Cruz).
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3

Multiparameter Flow Cytometric Analysis of Leukemic Cells

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For IKZF2 intracellular staining, cells were fixed with 1.5% paraformaldehyde and permeabilized with ice-cold methanol. Cells were washed 2 times with PBS and incubated with IKZF2 antibody-PacBlue (Biolegend) together with Mac1-PE and c-Kit-APC-Cy7 in 2% PBS for 1hr at room temperature. Cells were then washed twice with 2% FBS/RPMI and analyzed using BD Fortessa instrument. Murine leukemic cells were stained for Mac1-PB, Gr1-APC, F480-PE-Cy7, CD115-APC and c-Kit-APC-Cy7 and analyzed to assess differentiation status. For human leukemic cells CD13-APC, CD14-PE, CD33-APC and CD11b-PE were used for differentiation analysis. For measuring apoptosis, cells were washed with PBS and incubated with anti-Annexin V-PE (BD Biosciences) in the Annexin-V binding buffer (10 mM HEPES, pH 7.4, 140 mM NaCl, 4 mM KCl, 0.75 mM MgCl2, 1 mM CaCl2) together with 5 μl of 7-AAD in the reaction volume of 100 μl for 15 minutes as recommended by the manufacturer.
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4

Activation Marker Analysis of CD4+ T Cells

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Activation markers, namely CD25 and CD69 were analyzed as described previously (Stoszko et al., 2016 (link)). Briefly, CD4+ T cells were treated with DMSO, compound, or PMA/Ionomycin for 24 and 72 hours. Cells were collected, washed with PBS and stained for 30 min at 4 °C with α-CD25-APC (17–0259-42, eBioscience) and α-CD69-FITC (11–0699-42, eBioscience). Following two washes with PBS, cells were fixed with 1% HCHO at 4 °C and analyzed by flow cytometry with Becton Dickinson Fortessa instrument. To determine percent of apoptotic cells after treatment cells were stimulated for 24 and 72 hours and stained with anti-AnnexinV-PE (BD Biosciences, cat. 556454) in the presence of 2.5 mM CaCl2 for 20 min at 4 °C. Cells were analyzed by Becton Dickinson Fortessa flow cytometer. Data represents the average of six experiments performed on cells from different healthy donors. Viability of ex-vivo infected primary CD4+ cells was determined by flow cytometry on the basis of forward versus side scatter analysis.
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5

Monitoring Leukemia Cell Differentiation and Apoptosis

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To monitor the differentiation status, cells were stained with the following antibodies: APC-CD11b (ThermoFisher, CD11b 05), APC-CD13 (ThermoFisher, MHCD1305), PE-CD14 (BD Pharmingen, 555398), PE-CD33 (BD Pharmingen, 555450). To measure apoptosis, cells were washed with PBS and incubated with anti– PE-Annexin V (BD Pharmingen, 556421) in the ANNEXIN-V binding buffer in a reaction volume of 100 μl for 15 minutes based on manufacturer’s instruction. DAPI was added prior to analysis. Cells were analyzed on a BD FACS LSR Fortessa instrument.
To monitor human leukemia cell engraftment, bone marrow cells from recipient mice were stained with APC-mouse CD45.1 (Biolegend 110720) and PerCP-Cyanine 5.5-human CD45 (eBioscience, 45-9459-42). Immunoblot analysis of engrafted human cells was performed using sorted human CD45 positive cells.
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6

Monitoring Leukemia Cell Differentiation and Apoptosis

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To monitor the differentiation status, cells were stained with the following antibodies: APC-CD11b (ThermoFisher, CD11b 05), APC-CD13 (ThermoFisher, MHCD1305), PE-CD14 (BD Pharmingen, 555398), PE-CD33 (BD Pharmingen, 555450). To measure apoptosis, cells were washed with PBS and incubated with anti– PE-Annexin V (BD Pharmingen, 556421) in the ANNEXIN-V binding buffer in a reaction volume of 100 μl for 15 minutes based on manufacturer’s instruction. DAPI was added prior to analysis. Cells were analyzed on a BD FACS LSR Fortessa instrument.
To monitor human leukemia cell engraftment, bone marrow cells from recipient mice were stained with APC-mouse CD45.1 (Biolegend 110720) and PerCP-Cyanine 5.5-human CD45 (eBioscience, 45-9459-42). Immunoblot analysis of engrafted human cells was performed using sorted human CD45 positive cells.
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