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5 protocols using rac1 cdc42

1

Molecular Pathways in Cell Migration

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IPA-3 and U0126 were purchased from Selleck Chemicals (Shanghai, China). Antibodies and their sources are as follows: antibodies against p-PAK1 (T423, #2601), PAK1 (#2602), PAK2 (#4825), PAK3 (#2609), Rac1/Cdc42 (#4651), Raf1 (#9422), p-Raf1 (S338, #9427), MEK1 (#2352), p-MEK1 (S298, #9128), ERK1/2 (#4695), p-ERK1/2 (T202/Y204, #4370), MMP-2 (#4022) and MMP-9 (#3852) were obtained from Cell Signaling Technology (Beverly, MA). Primary antibodies against p-PAK2 (S141, #SAB4504634) and Actin (#4700) were purchased from Sigma-Aldrich (Shanghai, China).
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2

Analyzing Rho GTPase Signaling in H1299 Cells

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H1299 cells were plated in RPMI media containing 10% FBS at a density of 5.0 × 104/mL into each 100 × 20 mm tissue culture dish. The cells were incubated (37°C/5% CO2) overnight to allow them to adhere to the plates. The next day, the media were removed and replaced with experimental media containing PCAIs (0 – 5 μM) or 5 μM NSL-100 and then incubated for 24 h. The cells were washed with PBS, lysed with RIPA buffer and the amount of protein in lysates was determined using Pierce BCA Protein Assay kit (Thermo Scientific, Rockford, IL). Lysate volumes containing 50 μg of protein were boiled in Laemmli sample buffer and subjected to SDS-PAGE. Proteins were then transferred onto PVDF membrane and immunoblotted using antibodies against Rac1, Cdc42 and RhoA (67B9) that were purchased from Cell Signaling Technology (Danvers, MA). Bound antibodies were visualized using horseradish peroxidase-linked anti-rabbit IgG (Santa-Cruz Biotechnology, sc-2004) and ECL reagents (Bio-Rad) according to the manufacturer's recommendation.
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3

Investigating TIAM1 in Colorectal Cancer

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The polyclonal antibody against TIAM1 was purchased from Bethyl Laboratories, Inc (clone A300-099A; Montgomery, TX, USA). The monoclonal antibody against β-actin was purchased from Sigma-Aldrich (Darmstadt, Germany). Antibodies against Nanog (D73G4, #4903), Oct4 (#75463, D7O5Z), ALDH (D9Q8E, #54135), phospho-Rac1/Cdc42 (Ser71, #2461), and Rac1/Cdc42 (#4651) were purchased from Cell Signaling Technology (Danvers, MA, USA).
TIAM1 expression was transiently downregulated using two predesigned Silencer Select siRNAs directed against TIAM1 (#s14138 and s14139) (Thermo Fisher Scientific), and a non-targeting siRNA was used as a negative control. CRC cells were transfected with the annealed siRNA for 24 h using Lipofectamine RNAimax (Thermo Fisher Scientific), and TIAM1 expression was assessed by qPCR, 24 h following initial transfection. Tiam1 expression was examined by western blotting and subsequent experiments were conducted 48 h following the transfection.
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4

Protein Extraction and Western Blot Analysis

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Total proteins were isolated from tissues and cells, using lysis buffer containing mammalian protein extraction reagent RIPA (Beyotime, China), PMSF (Roche) and protease inhibitor cocktail (Roche, Basel, Switzerland). Protein concentration was determined using a Bio‐Rad Protein Assay kit (KeyGEN Biotech, Jiangsu, China). Protein samples (30 μg) were electrophoresed by 12% or 10% SDS‐PAGE, transferred to 0.22 μm polyvinylidene fluoride (PVDF) membranes (Millipore, USA) and incubated with specific antibodies (GGPPS, 1:500, sc‐271680, Santa Cruz Biotechnology, TX, USA; GAPDH, 1:10,000, ab181602, Abcam, Cambridge, UK; E‐Cadherin, 1:1000, 3195, Cell Signaling Technology; N‐Cadherin, 1:1000, 13116, Cell Signaling Technology; Vimentin, 1:1000, 5741, Cell Signaling Technology; Rac1/Cdc42,1:1000,4651, Cell Signaling Technology). After incubation with secondary antibody, protein bands were detected using an ECL detection system (Tanon, China).
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5

Immunoblot Analysis of Cytoskeletal Regulators

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Proteins were isolated from SGC-7901 and MKN-45 cell lines as previously treated using Native lysis Buffer (Solarbio, Beijing Solarbio Science and Technology, Beijing China). Cell protein lysates were separated by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Specific bands were detected by Immunoblots visualized by ECL detection system (Quantity One software, BioRad). GAPDH antibody (1:10,000) (Abcam, Cambridge, MA, USA) was used as a control. NET1 (1:500) and RhoA (1:500) antibodies were purchased from Proteintech (Proteintech, China), Rac1, CDC42 (1:1000) and Phospho-Rac1/ CDC42 (Ser71) (1:500) were purchased from Cell Signaling Technology (Cell Signaling Technology, USA). Moreover, Phospho-RhoA (phospho S188) (1:1000) was obtained from Abcam.
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