The largest database of trusted experimental protocols

5 protocols using na935v

1

Protein Extraction and Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
To collect protein lysate, infected monolayers were rinsed twice with PBS and lysed in RIPA buffer (25 mM Tris pH 7.4, 150 mM NaCl, 0.1% SDS, 1% NP-40, 0.5% sodium deoxycholate) supplemented with a protease and phosphatase inhibitor cocktail (Sigma, PPC1010). Lysates were sonicated on ice and clarified by centrifugation at 21,000 xg for 10 min at 4°C. Samples were run on NuPAGE gels and transferred to nitrocellulose membranes. Blots were blocked for 30 min in a 5% non-fat milk TBST solution. Primary antibodies against the HA epitope (Roche, 11867423001, 1:1,000) and the SAG1 loading control (Thermo Fisher, MA5-18268, 1:1,000) were incubated overnight with the blot while rocking overnight at 4°C. Bands were detected by chemiluminescence using appropriate HRP-conjugated secondary antibodies (GE Healthcare, NA935V, NA931V, 1:5,000).
+ Open protocol
+ Expand
2

Detecting Malaria Parasite Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
5 × 106P. falciparum NF54 sporozoites were resuspended in 100 μL 2× NuPAGE sample buffer supplemented with reducing agent (Thermo Fisher Scientific) and incubated at 95°C for 5 min, after which DNA was sheared. The resulting sporozoite protein extract was resolved on a 3%–8% Tris-Acetate SDS-polyacrylamide gel (NuPAGE) using MOPS SDS Running Buffer (Thermo Fisher Scientific) and transferred to a PVDF membrane. The membrane was blocked for 1 hr with 5% milk in TBST (50 mM Tris, 150 mM NaCl, 0.1% Tween 20). PfEMP1 proteins were detected using guinea pig anti-ATS antibodies (Nacer et al., 2015 (link)) or anti-NF54_SpzPfEMP1 antibodies. PfAldolase was detected with anti-PfAldolase-HRP (horseradish peroxidase) antibodies (Abcam, ab38905). Primary antibodies were detected by goat anti-guinea pig-HRP (Abcam, ab6908), anti-rat-HRP, or anti-mouse-HRP (GE Healthcare Life Sciences, NA935V and NA931V, respectively) secondary antibodies. HRP signal was developed with SuperSignal West Pico chemiluminescent substrate (Thermo Fisher Scientific, #34080) and imaged with a ChemiDoc XRS+ System (Bio-Rad). Images were analyzed using the Fiji image processing package (http://fiji.sc).
+ Open protocol
+ Expand
3

Western Blot Analysis of Cellular Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE) was performed using NuPAGE Novex 4–12% Bis-Tris precast gels (Invitrogen). Western blotting was performed according to standard protocol using a nitrocellulose (Whatman, Protran) or PVDF (Millipore, Immobilon-P) membrane. The following antibodies were used: phospho-RPS6 (Ser235/236), phospho-4EBP1 (Thr37/46) (Life Technologies, Grand Island, NY, USA), p53, p27 (AnaSpec, Inc.), S6 (Santa Cruz Biotechnology, USA) and α-tubulin (Sigma, MO, USA). Secondary antibodies were HRP linked, anti-rabbit IgG (from donkey) and anti-mouse IgG (from sheep) (GE Healthcare, NA934V, NA931V and NA935V, respectively).
+ Open protocol
+ Expand
4

ABCC11 Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The expression of ABCC11 protein in plasma membrane vesicles was examined by immunoblotting, as described previously [4 (link),9 (link)] with minor modifications. Briefly, the prepared samples were electrophoretically separated on poly-acrylamide gels and transferred to a Hybond® ECLTM nitrocellulose membrane (GE Healthcare, Buckinghamshire, UK) by electroblotting at 15 V for 70 min. After blocking by Tris-buffered saline containing 0.05% Tween 20 and 5% skim milk (TBST-skim milk) at 4 °C overnight, blots on the membrane were probed with a rat monoclonal anti-ABCC11 antibody (M8I-74; Abcam, Cambridge, MA, USA; diluted 200 fold) and a rabbit polyclonal anti-Na+/K+-ATPase α antibody (sc-28800; Santa Cruz Biotechnology, Santa Cruz, CA, USA; diluted 1000 fold), followed by incubation with a goat anti-rat immunoglobulin G (IgG)–horseradish peroxidase (HRP) conjugated antibody (NA935V; GE Healthcare; diluted 2000 fold) and a donkey anti-rabbit IgG–HRP conjugated antibody (NA934V; GE Healthcare; diluted 3000 fold), respectively. All antibodies were used in TBST-skim milk. HRP-dependent luminescence was developed using the ECLTM Prime Western Blotting Detection Reagent (GE Healthcare) and detected using a multi-imaging Analyzer Fusion Solo 4TM system (Vilber Lourmat, Eberhardzell, Germany).
+ Open protocol
+ Expand
5

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
In human tissue culture cells, after 72 hours of siRNA knockdown, protein was harvested by scraping, rinsed in PBS, and lysed by vortexing in AZ lysis buffer (50 mM Tris pH 7.5, 250 mM NaCl, 1% Igepal, 0.1% SDS, 5 mM EDTA pH 8.0) containing protease inhibitors (cOmplete Protease Inhibitor Cocktail, Roche, 11697498001) for 15 minutes at 4°C. The lysate was spun at 21,000 x g for 15 minutes at 4°C. The supernatant was removed, and total protein was quantified by Bradford assay (Bio-Rad). Samples were analyzed via SDS-PAGE. Antibodies used include α-p53 (1:5,000 Santa Cruz, sc-126 HRP), α-β-actin (1: 30,000 Sigma-Aldrich A1978), α-PAX9 (1:1,000, Cell Signaling Technology D9F1N), α-vinculin (1:20,000 Abcam ab18058), and α-puromycin (1:10,000 Kerafast 3RH11). HRP conjugated secondary antibodies include α-mouse (1:10,000 GE Healthcare NXA931) and α-rat (1:10,000 GE Healthcare NA935V). Images acquired either by film developing or by digital imaging using the BioRad ChemiDoc Imaging System.
For X. tropicalis western blotting, protein was harvested according to the TRIzol (Life Technologies 5596018) protocol for 2 replicates, and as in [70 (link)] for 1 replicate. Samples were analyzed via SDS-PAGE. Antibodies included α-p53 (1:800, Thermo Fisher MA1-12549) and α-GAPDH (1:5,000 Ambion AM4300). HRP conjugated secondary antibodies include α-mouse (1:10,000 GE Healthcare NXA931).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!