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3 protocols using cd86 pe cy7 clone gl 1

1

Evaluating Transduced Dendritic Cells

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In addition to determining the downregulation of expression of the target gene, the efficacy of transduction was assessed by flow cytometry as the percentage of enhanced green fluorescent protein-positive (EGFP+) cells. The surface phenotype characteristics of transduced DCs were also evaluated by flow cytometry. For this purpose, cells were stained with anti-MHC II APC-Cy7 (clone M5/114.15.2; BioLegend), anti-CD40 BrilliantViolet 605 (clone 3/23; BD Pharmingen), CD80 PerCP-Cy5.5 (clone 16-10A1; BioLegend), CD86 PE-Cy7 (clone GL-1; BioLegend) and CD11c BrilliantViolet 650 (clone N418, BioLegend) monoclonal antibodies and elimination of the dead cells was carried out by using the DAPI dye.
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2

Flow Cytometry Antibody Panel

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Viability dye (cat. L34968) and CFSE (cat. 65-0850-84) were both purchased from Invitrogen. The following monoclonal antibodies (mAbs) were also purchased from Invitrogen: H-2Kd APC (clone SF1-1.1.1, cat. 17-5957-82), CD8a PE-Cy7 (clone 53-6.7, cat. 25-0081-82), MHCII Pacific Blue (clone M5/114.15.2, cat. 48-5321-8), and CD11c PE-Cy7 (clone N418, cat. 12-7177-82). The following mAbs were purchased from Biolegend: CD4 APC/cy7 (clone GK1.5, cat. 100414), CD11b APC (clone M1/70, cat. 101212), CD86 PECy7 (clone GL-1, cat. 105014). B220 APC (clone RA3-6B2) was purchased from BD Pharmingen (cat. 553092). We obtained anti-CD5.1 (Ly5.1)-FITC, clone H11-86.1, from BD Pharmingen (cat 557487).
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3

Flow Cytometric Analysis of Germinal Center B Cells

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Spleens were prepared into single cell suspension and red blood cells were lysed
in cold distilled water. After filtered through 70-µm nylon mesh and counting
using a MACSQuant analyzer (Miltenyi Biotec), cells were incubated with anti-CD16/32
antibody (Bio X Cell) to block Fc receptors and stained with fixable viability dye eFluor
780 (eBioscience). Cells were then stained for 20 min in staining media (Hank’s
balanced salt solution, 3% FBS, 0.02% sodium azide, 1 mM EDTA) with
primary antibodies including B220-FITC, B220-eVolve 655 (clone RA3–6B2),
GL7-eFluor 660, GL7-eFluor 450 (clone GL7), CD95-PE, CD95-APC (clone 15A7) (eBioscience),
peanut agglutinin (PNA)-biotin (Vector Laboratories), CD86-Pe-Cy7 (clone GL-1; BioLegend)
or CD184-biotin (2b11/CXCR4; BD Biosciences). Cells stained with biotin-labeled antibodies
were incubated with streptavidin-eFluor 450 (eBioscience). For intracellular staining,
cells were stained with fixable viability dye eFluor 780, permeabilized and fixed using a
cytofix/cytoperm plus kit (BD Biosciences) according to manufacturer suggested protocol.
Cells were then stained with YY1 antibody (H-414; Santa Cruz Biotechnology) and DyLight
594-conjugated secondary antibody (Jackson ImmunoResearch). Flow cytometry analysis was
performed on an LSRII FACS or a FACSAria cell sorter (BD Biosciences), and analyzed using
FlowJo software (FlowJo).
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