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Hiscript iiq rt supermix for qpcr gdna wiper kit

Manufactured by Vazyme
Sourced in United States, China

HiScript®IIQ RT SuperMix for qPCR (+gDNA wiper) is a kit developed by Vazyme. It is designed for reverse transcription and real-time quantitative PCR (qPCR) analysis. The kit includes reagents for cDNA synthesis and gDNA removal.

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6 protocols using hiscript iiq rt supermix for qpcr gdna wiper kit

1

Quantifying Pepper CaR2R3-MYB and CBG Expression

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Total RNA extraction was carried out using the TransZol kit (TransGen Biotech, Inc., Beijing, China). cDNA reverse transcription refers to use of the HiScript®IIQ RT SuperMix for qPCR (+gDNA wiper) vazyme kit (Vazyme, Piscataway, NJ, United States). quantitative polymerase chain reaction (qRT-PCR) was carried out in LightCycle 96 Real-Time PCR System (Roche, Basel, Switzerland) with 25 μL reaction system. Three biological repeats and three technical repeats were used to calculate the relative quantification according to the Ct values collected by the instrument. The formula is: 2−△△Ct =  2−[(Target gene control CtTarget gene sample Ct)−(Reference gene control CtReference gene sample Ct)]. The actin gene Capana04g001698 was used as reference gene which was selected from pepper. The primers of six CaR2R3-MYB DEGs and four CBGs were developed by GenScript Real-time PCR (TaqMan) Primer and Probes Design Tool6, which were listed in Supplementary Table 3.
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2

Lettuce GRAS13 Gene Silencing

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The HiScript®IIQ RT SuperMix for qPCR (+gDNA wiper) vazyme kit (Vazyme, Piscataway, NJ, United States) was utilized with a 50 µL reaction system to complete three biological and three technical replicates for each sample. The LsGRAS13 gene was cloned from lettuce cDNA, subjected to restriction through double enzyme digestion, and its fragment was amplified by using PCR. Simultaneously, the TRV2 vector (35 s promoter) underwent double enzyme digestion with EcoRI (GATTCTGTGAGTAAGGTTACCG) and BamHI (GAGACGCGTGAGCTCGGTACCG). The PCR primers used were LsGRAS13-F: CTTCGGATTGGAGGTCTGATGTGG and LsGRAS13-R: TGAACAGAATCGGAGGCAAGTTGAG. The recovered PCR product was then ligated with the vector to produce the recombinant plasmid. The identified recombinant plasmid was then transformed into Agrobacterium GV3101, and the infection solution was prepared. The infection buffer comprised 10 mM magnesium chloride, 10 mM MES buffer, and 20 mM acetylsyringone (MMA) [4 (link)]. The experiment was categorized into three groups: a blank control group (WT), a negative control group (TRV2-TRV1), and an experimental group (TRV2-LsGRAS13).
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3

RNA Reverse Transcription with HiScript II

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The total RNA was reverse-transcribed according to the instructions of the HiScript®ⅡQ RT SuperMix for qPCR (+gDNA wiper) kit (Vazyme Biotech, Nanjing, China). The reaction system has two steps as follows: the first step was performed in a total of 20 μL reaction by using 4×gDNA wiper mix 4 μL, with a total RNA 4 μL and RNase free ddH2O 12 μL, incubated at 42 °C for 2 min; the second step was performed by adding 4 μL 5×HiScript® II qRT SuperMix IIa and 16 μL. The first step of the reaction was conducted at 50 °C for 15 min, then 85 °C for 5 s, and the product of cDNA was stored at −20 °C.
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4

Quantitative Real-Time PCR for Gene Expression Analysis

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Total RNA was extracted using the RNeasy Plant Mini Kit (Qiagen, Duesseldorf, Germany, Cat. No. 74904). First‐strand cDNA synthesis was carried out with HIScriptⅡ QRT SuperMix for qPCR gDNA wiper Kit (Vazyme, Nanjing, China) following the protocol provided by the manufacturer. RT‐qPCR was performed using TransStart® Top Green qPCR SuperMix (TransGen Biotech, Beijing, China). qTOWER 3G Cycler was used to work program. The relative expression levels of genes were calculated using the 2ΔΔCt method (Arocho et al., 2006 (link)). The PuActin7 and PuUBQ10 served as the internal control (Wei et al., 2020a ,2020b (link)).
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5

RNA-seq Analysis of Capsicum Cultivar

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The TransZol kit (TransGen Biotech, Inc., Beijing, China) was used to extract total RNA, and HiScript®ⅡQRT SuperMix for qPCR (+gDNA wiper) vazyme kit (Vazyme, Piscataway, NJ, United States) was used to synthesize the reverse cDNA. The raw data for the RNA-seq analysis were downloaded from Pepper Hub (Liu et al., 2017 (link)), and a high-generation inbred capsicum line “6421”, was used. Fastqc was used for quality control of the sequencing data (Brown et al., 2017 (link)) and the low-quality sequences were removed using Trimmmatic-0.36 (Bolger et al., 2014 (link)). HISAT2 was used to align the sequencing reads to the reference genome, “Zunla” (Kim et al., 2014 (link)), and FeatureCounts was used to calculate the number of counts (Liao et al., 2014 (link)). Standardize counts data from DESeq2 package in R (Varet et al., 2016 (link)), and the fragments per kilobase of exon model per million mapped reads (FPKM) value represented the corresponding gene expression.
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6

Transcriptional Regulatory Analysis of CaBBXs

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GO enrichment analyses were conducted using Plant Transcriptional Regulatory Map (Jin et al., 2017 (link)) and WEGO2.0 (Ye et al., 2006 (link)) online tool with the corrected p-value <0.05. LightCycle * 96 Real-Time PCR System (Roche, Basel, Switzerland) was used for performing qRT-PCR. A 50 μl reaction system was set and three biological repeats and three technical repeats were performed for each sample based on HiScript®ⅡQ RT SuperMix for qPCR (+gDNA wiper) vazyme kit (Vazyme, Piscataway, NJ, United States). The 2−△△Ct formula was used to calculate the relative expressions. The primers for CaBBXs and actin control (Capana04g001698) were listed in Supplementary Table S2.
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