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7 protocols using pmir rb report dual luciferase reporter vector

1

Validating miR-6778-5p interaction with YWHAE 3'UTR

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The 3′ UTR of YWHAE mRNA (NM_006761.4:921-1827) was amplified from cDNA derived from the total RNA of HEK293T cells and subcloned into the pmiR-RB-REPORTTM dual luciferase reporter vector (Ribobio, China). Mutation reporter vector, with a mutation in the 3’UTR complementary to the seed sequence of miR-6778-5p, was generated by PCR. HEK293T cells were co-transfected with 100 ng of the reporter vectors, together with miR-6778-5p or negative controls mimics (50 nM). Cells were harvested 48 h after the transfection, luciferase assays were performed with the Dual-Luciferase reporter Gene Assay Kit (Beyotime, China) according to the manufacturer’s instruction.
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2

Validating miR-196a-5p Binding to HOXB7

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The HOXB7 3ʹ-UTR (containing the putative miR-196a-5p binding sites) was cloned into the PmiR-RB-ReportTM dual-luciferase reporter vector (Guangzhou RiboBio Co. Ltd.). Using the EndoFectinTM-Max transfection reagent (GeneCopoeia, Inc.), MGC803 cells were transfected with the following: HOXB7-WT/NC vector, HOXB7-WT vector + miR-196a-5p mimic, HOXB7-MUT/NC vector, or HOXB7-MUT vector + miR-196a-5p mimic. Lipo6000TM transfection reagent (Beyotime Biotechnology, Inc.) was used for cell transfection. Culture medium was replaced 6 h after transfection. The luciferase activity values were calculated 48–72 h post-transfection. In this assay, firefly luciferase was used as the experimental reporter gene, and Renilla luciferase was used as the control reporter gene. Experimental reporter genes were used to test gene expression under experimental conditions, while control reporter genes were used as internal controls to normalize the results of experimental reporter tests.
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3

miR-15a/16 Regulates SOX5 Expression

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MiR-15a/16 mimics and control were purchased from GenePharma (Shanghai, China). SOX5 3’UTR region was amplified from 293T cell genomic DNA, and the PCR product was cloned into pmiR-RB-ReportTM dual-luciferase reporter vector (Ribobio, Guangzhou, China) to generate SOX5 3’UTR wild-type (WT) and mutant plasmids. 293T cells were co-transfected with luciferase reporter constructs and WT or mutated corresponding SOX5 using Lipofectamine 2000 DNA Transfection Reagent (Thermo Fisher Scientific, Cleveland, OH, USA), according to the manufacturer's protocol. After transfection for 48 hours, the activity of luciferase constructs was measured using a DualGlo Luciferase Assay System (Promega) according to the manufacturer’s instructions. The firefly luciferase activity was used for normalization. For construction of SOX5 overexpression vector, the full-length of SOX5 cDNA was generated via standard PCR and inserted into the pAd- CMV-MC5 as described (Ad-SOX5) [4 (link)].
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4

Validating miR-320a Binding to TUSC3 3'UTR

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TargetScan bioinformatics software version 7.2 (www.targetscan.org/vert_72) was used to predict the potential targets of miR-320a. Binding sites between miR-320a and the 3'-untranslated region (3'-UTR) of TUSC3 were observed. Dual luciferase reporter assay was performed to determine whether miR-320a directly bound to TUSC3. Wild-type (WT) and mutant (MUT) 3'-UTR of TUSC3 were cloned into pmiR-RB-Report™ dual luciferase reporter vector (Guangzhou RiboBio Co., Ltd.) according to the manufacturer's instructions. 293 T cells (American Type Culture Collection) were co-transfected with WT-TUSC3 or MUT-TUSC3 and 100 nM miR-320a mimic (5'-AAAAGCUGGGUUGAGAGGGCGA-3'; 3'-UUUUCGACCCAACUCUCCCGCU-5'; Guangzhou RiboBio Co., Ltd.) or 100 nM mimic control (5'-UUCUCCGAACGUGUCACGUTT-3'; 3'-TTAAGAGGCUUGCACAGUGCA-5'; Guangzhou RiboBio Co., Ltd.) using Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) at 37˚C for 48 h. At 48 h after transfection, luciferase activity was determined using the Dual-luciferase® Reporter Assay system (Promega Corporation) and normalized to Renilla luciferase activity.
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5

Validation of miR-495 Binding to GRP78 mRNA

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The bioinformatics software predicted the binding between miR-495 and GRP78 mRNA. RT-PCR was used to amplify a sequence encompassing these 501 base pairs. The primers for amplification were designed as follows: GRP78_WT_forward, 5′-ACTGCTGTTTTCAGATGGAGGT-3′ and reverse, 5′-CTAGGAGCCAGCTCAGATGC-3′; GRP78_mut_forward, 5′-TGCGGAGATCTATCTATCATGGC-3′ and reverse, 5′-GGTGTCAGGCGATTCTGGTC-3′. The amplified fragments were cloned into the pmiR-RB-REPORT™ dual luciferase reporter vector (Guangzhou RiboBio Co., Ltd., Guangzhou, China). The hRluc vector was used to report fluorescence, and the 3′UTR of GRP78 was cloned downstream of the hRluc gene. The directly targeted region was determined by cloning the 3′UTR seed region and the mutated seed region into the pmiR-RB-REPORT™ luciferase reporter vectors (Guangzhou RiboBio Co., Ltd.).
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6

Mtdh 3'UTR Luciferase Assay

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The 3′-UTR of Mtdh containing putative miR-30-binding sites was amplified and cloned into PmiR-RB-REPORT dual-luciferase reporter vector (RiboBio). In addition, a mutated Mtdh 3′-UTR was constructed (TGTTTAC (26–33, 284–291, 1547–1554) to ACAAATG; GTTTAC (563–569) to CAAATG). MPC5 cells in logarithmic growth phase were seeded into 96-well plates and incubated for 48 h before the transfection. miRNA mimics or NCs and luciferase reporter vector containing the 3′-UTR of Mtdh or the mutant sequence vector were co-transfected into the cells using Lipofectamine 2000 transfection reagent (Invitrogen) in OPTI-MEM (Gibco BRL). Cells were collected 48 h after the transfection and dual-luciferase reporter assay was performed (Promega, Madison, WI, USA). Firefly luciferase activity was normalized to the corresponding levels of renilla luciferase activity.
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7

Validating miR-214-3p Binding to Slc8a1

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TargetScan (http://www.targetscan.org/vert_71) was used to predict the targets of miR‐214‐3p, and Slc8a1 was identified as a potential target of miR‐214‐3p. To confirm the direct binding sites between miR‐214‐3p and Slc8a1, a dual luciferase reporter assay was performed. The 3′‐untranslated region (UTR) of wild‐type and mutant Slc8a1 was cloned into a pmiR‐RB‐REPORT dual‐luciferase reporter vector (Guangzhou RiboBio Co., Ltd.) according to the manufacturer's instructions. Cells were co‐transfected with wild‐type or mutant Slc8a1 and the miR‐214‐3p mimic or 50 nM mimic control following the manufacturer's protocol. After 48 h, luciferase activity was assessed using the Dual‐Luciferase Assay System (Promega Corporation) following the manufacturer's protocol. Luciferase activity detected in the cells was normalized to Renilla luciferase activity.
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