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14 protocols using amphotericin

1

Angiogenic Potential of Aortic Rings

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After sacrificing the mice, thoracic aortae were dissected and adipose tissue/fat was removed, washed, and cut into 1-mm rings 37 (link). Next, the aortic rings were embedded in Matrigel (growth factor reduced; BD Biosciences, Oxford, UK) and cultured in M199 medium (Invitrogen) containing 2% FCS, 12% ECGS (Sigma-Aldrich), 200 µl/ml gentamycin (Invitrogen), and 2.5 µl/ml amphotericin (Lonza) in the presence or absence of LT (30 ng/ml), LIGHT (30 ng/ml), TNF (100 ng/ml) or VEGF (100 ng/ml) (all R&D Systems). After 8 days, microvessel outgrowth was analysed using Leica imaging software.
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2

Aortic Angiogenesis Assay Protocol

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After sacrificing the mice, thoracic aortae were dissected, adipose tissue/fat
removed, washed and cut into 1-mm rings [37 ]. Next,
the aortic rings were embedded in Matrigel (growth factor reduced, BD Biosciences, Oxford,
United Kingdom) and cultured in M199 medium (Invitrogen) containing 2% FCS, 12% ECGS
(Sigma-Aldrich), 200μl/ml gentamycin (Invitrogen), 2.5 μl/ml Amphotericin
(Lonza) in the presence or absence of LT (30ng/ml), LIGHT (30 ng/ml), TNF (100 ng/ml) or
VEGF (100 ng/ml) (all R&D Systems). After 8 days, microvessel outgrowth was analyzed
using Leica imaging software.
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3

Recellularization of Vascular Grafts

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The entire RC process was performed under sterile conditions and all perfusions were carried out in an incubator at 37 °C supplied with 5% CO2. Before RC, the veins were perfused with heparin (Leopharma, Sweden) at a concentration of 50 IU/ml PBS for 2 h. The heparin was drained off and the whole blood was immediately perfused for 48 h at 2 ml/min speed. For collection of blood, see Supplement 1. The blood was then drained off and the veins were washed with PBS containing 1% penicillin–streptomycin–amphotericin for 3–5 min or until the blood was completely removed. The veins were subsequently perfused 4 days with EC and 4 days with SMC media. The complete EC medium contained basal medium MCDB 131, 10% heat inactivated human AB serum, 1% l-glutamine and 1% penicillin–streptomycin–amphotericin and supplemented with EGM-2 Single Quote kit (Lonza, Walkersville, MD USA). A commercially available SMC medium (Cascade Biologics) containing growth and differentiation factor supplements was used. The veins were recellularized for a total of 10 days.
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4

Astrocytic Cell Model: T98G Culture

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T98G cell line was used as an astrocytic cell model system (ATCC CRL-1690) (Gasque et al., 1996 (link); de Joannon et al., 2000 (link); Mao et al., 2006 (link)). Cells were maintained under exponential growth in Dulbecco's modified Eagle's medium (DMEM) (LONZA, Walkersville, USA), containing 10% fetal bovine serum (FBS) (LONZA, Walkersville, USA), and 10U penicillin/10 μg streptomycin/25 ng amphotericin (LONZA, Walkersville, USA). The medium was changed three times a week. Cultures were incubated at 37°C in a humidified atmosphere containing 5% carbon dioxide and 95% oxygen. Cells were seeded in 96-well plates for cell death measurement, 12-well plates for flow cytometry determinations and 24-well plate for tetra-methyl rhodamine methyl ester (TMRM) and immunofluorescence measurements.
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5

Generating SOX2 Knockdown in Normal Lung Fibroblasts

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Normal human lung fibroblasts (NHLFs) from the American Type Culture Collection (Manassas, VA, U.S.A.) were used throughout this study. They were cultured in complete FBM medium with Fibroblast Growth Medium-2 SingleQuots supplemented with 2% fetal bovine serum (FBS), 0.1% insulin, 0.1% human basic fibroblast growth factor (bFGF), 30 μg mL− 1 gentamicin, and 15 ng mL −1 amphotericin (Lonza Walkersville, Inc., Walkersville, MD, U.S.A.). The cells were maintained under a subconfluence condition at 37 °C with 5% CO2. Early passages of NHLFs (passages 2−5) were used in this study. For the generation of stable SOX2 knockdown cells, 2 × 105 cells were seeded in each well of 6-well plates with a total volume of 1 mL of media and incubated overnight. SOX2 knockdown experiments were conducted using lentivirus-mediated gene transfection. The cells were washed, and the culture medium was replaced with 2.5 mL per well of fresh medium containing 2 μg mL−1 hexadimethrine bromide. The cells were then infected with either control or SOX2 shRNA lentivirus (Applied Biological Materials Inc., Richmond, BC, Canada) and incubated for 24 h. Next, the cell culture medium was replaced with 2 mL of fresh medium, and cells were further cultured for 48 h and allowed to recover for 24 h prior to experiments.
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6

Anticancer Evaluation of Boronic Compounds

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The anticancer activity of boronic compounds containing imine ligands was evaluated by using PC-3 (Human Prostate Cancer Cells-ATCC® CRL-1435™) and L929 cells (Mouse Fibroblast Cells-ATCC® CCL-1™) as healthy cell line. Four concentrations (0.5, 1, 2, and 5 µM) of boronic compounds were prepared in Dulbecco's modified Eagle's medium (DMEM, Invitrogen, USA) containing 10% fetal bovine serum (Invitrogen, USA), and 1% of penicillin, streptomycin, and amphotericin (Lonza, USA). PC-3 and L929 cells were seeded onto 96-well plates at a concentration of 5000 cells/well, and then incubated at 37 °C in a humidified air atmosphere with 5% CO2 for 24 h for cell attachment. The prepared compounds were added into the cultured cells, and incubated for 24, 48 and 72 h, respectively. Cell viability was measured by the 3-(4,5-di-methyl-thiazol-2-yl)-5-(3-carboxy-methoxy-phenyl)-2-(4-sulfo-phenyl)-2H-tetrazolium (MTS)-assay (CellTiter96 AqueousOne Solution; Promega, Southampton, UK) according to the manufacturer's instructions. Cells were incubated with the MTS solution for 2 h at 37 °C and absorbance was measured at 490 nm using an ELISA plate reader (Biotek, Winooski, VT).
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7

Isolation and Culture of HUVECs

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Human Umbilical Vein Endothelial Cells (HUVECs) were isolated using collagenase type-II (Sigma Aldrich, USA) digestion from human umbilical cord. The cells were cultured in 0.1% gelatin coated T-25 flask using endothelial growth medium-2 (EGM-2) supplemented with 2% FBS, VEGF, rhEGF, rhFGF-B, R3-IGF-1, gentamicin sulphate, amphotericin, hydrocortisone, heparin and ascorbic acid (Lonza, Switzerland). Cells between 2nd to 6th passages were used for the experiments as indicated36 (link).
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8

Rat Vascular SMCs Immunostaining

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Rat vascular SMCs (Lonza) were maintained in DMEM/F12 supplemented with 20% fetal bovine serum and 0.1% GA-1000, containing 30 μg/ml Gentamicin and 15 ng/ml Amphotericin (Lonza). For immunostaining, cells were grown on 4-well chamber slide (Thermofisher) and the plasmid DNA encoding human Slingshot-1L (WT or CS, a phosphatase mutant) fused with YFP (generous gift from Dr. Kensaku Mizuno), were transfected into cells using Lipofectamine 2000 (Life Technologies) according to the manufacturer’s instructions. Forty eight to 72 hrs after transfection, cells were fixed in 100% Methanol at −20°C for 20 minutes, blocked with 2% BSA fraction V (Wako Chemical, Japan) containing 0.1% Tween-20 for 1 hour, and incubated with phospho-cofilin antibodies (Santa Cruz, 1:500) overnight at 4°C. Alexa Fluor 568-conjugated secondary antibodies (Invitrogen) were used at a dilution of 1:200 for 1 hour at 37°C. Slides were covered with Vectarshield containing DAPI (Vector Laboratories). Fluorescence images were obtained using a LSM700 (ZEISS).
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9

Generation of Progenitor-Derived Astrocytes

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Progenitor-derived astrocyte (PDAs) were generated from neural progenitor cells (kindly provided by Dr. Eugene Major, NINDS, NIH, MD) as previously described [14 (link)]. Briefly, PDAs were maintained in progenitor medium consisting of Neurobasal media (Invitrogen) supplemented with 0.5 % bovine albumin (Sigma-Aldrich), neurosurvival factor (NSF; Lonza), N2 components (Invitrogen), 25 ng/ml basic fibroblast growth factor (bFGF), 20 ng/ml EGF (R&D Systems), 50 μg/ml gentamicin (Lonza), and 2 mM L-glutamine (Invitrogen). To induce differentiation, progenitor medium was replaced with PDA medium containing DMEM supplemented with 10 % heat-inactivated fetal bovine serum, 2 mM L-glutamine, and 50 μg/ml gentamicin. Cultures were >90 % positive for glial fibrillary acidic protein (GFAP) after 30 days of differentiation. Fetal-derived Normal Human Astrocytes (NHAs, Lonza) were maintained in Astrocyte Growth Media (AGM) BulletKit (Lonza) supplemented with 0.3 % heat-inactivated fetal bovine serum, 1 ml/ml ascorbic acid, 1 ml/ml rhEGF, 1 ml/ml AG-1000 (30 mg/ml gentamicin and 15 μg/ml amphotericin), 2.5 ml/ml insulin, and 10 ml/ml L-glutamine. Adherent primary cells were removed by treatment with 1 mM EDTA for 5 min with gentle scraping or pipetting multiple times.
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10

Cell Line Culture and Authentication

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SW480, LS174T, and CT26 cell lines were obtained from ATCC. HEK-293LTV cells were obtained from Cell Biolabs. LS174T, HEK-293LTV, and CT26 cells were grown in Dulbecco's Modified Eagle Medium (Gibco) supplemented with 10% v/v fetal bovine serum (Corning), L-glutamine (2 mM; Gibco), penicillin-streptomycin (100 U/ml; Gibco), Amphotericin (1 μg/ml; Lonza), and sodium pyruvate (1 mM; Gibco). SW480 cells were grown in McCoy’s 5A modified media with L-glutamine (Corning) supplemented with 10% v/v fetal bovine serum, penicillin-streptomycin (100 U/ml), Amphotericin (1 μg/ml), and sodium pyruvate (1 mM). All cells were grown at 37°C under 5% CO2 and passaged when the monolayer reached 80% confluency. All cell lines were authenticated by SPR profiling at MSKCC. All cells were regularly checked for mycoplasma contamination and have been negative.
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