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33 protocols using ly6g apc

1

Quantifying Caspase-1 Activity in Monocytes

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Active caspase-1 activity in monocytes was determined using the FAM FLICA Casp-1 assay kit (Immunochemistry Technologies, Davis, CA, USA) (Table S1), following the manufacturer’s instructions. In a subset of bone-marrow-transplanted animals, blood from Tg26+//ApoE−/−/Casp-1+/+ (n = 4) and Tg26+//ApoE−/−/Casp-1−/− mice (n = 4) was collected via tail bleeding. After removal of red blood cells, peripheral blood mononuclear cells (PBMCs) were incubated with monocyte markers, including CD11b-PE-Cy7, Ly6C-Flour450 (eBioscience, San Diego, CA), and Ly6G-APC (Bio legend, San Diego, CA, USA), for 30 min at room temperature (Table S1). After washing with 1xPBS, the cells were then stained with caspase-1 inhibitor FAM-YVAD-FMK at 37 °C for 1 h, followed by washing with the 1x apoptosis wash buffer provided in the kit. In the end, the supernatants were discarded, and the cells were resuspended with 300 μL of 1× apoptosis wash buffer. Caspase-1 activity in monocytes was recorded using BD LSR Fortessa flow (Becton Dickinson Immunocytometry Systems, San Jose, CA, USA). The analysis and histogram graphics were performed using the FlowJo software (version FlowJo_v10.9.0_CL) (Ashland, OR, USA).
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2

Multicolor Flow Cytometry of Myeloid Cells

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Cells harvested from the spleen were used for single color and multi-color staining controls. Control and tumor samples were resuspended at a concentration of 106 cells/100 uL in FWB in round bottom polystyrene tubes. Cells were stained with the following antibody fluorophore conjugates: CD45-PerCP/Cy5.5, CD11c-Pacific Blue, CD11b-AF700, MHCII-APC/Cy7, Ly6c-BV510, Ly6g-APC, CD38-FITC (Biolegend, San Diego, CA), F480-PE/Cy7 (Tonbo Bioscences, San Diego, CA), CD206-PE (R&D Systems, Minneapolis, MN) and propidium iodide (PI, Enzo Life Sciences, Farmingdale, NY). All antibody staining took place for 30 min at 4 °C in the dark. For all experiments, cells were acquired on the BD LSRII Fortessa flow cytometer. Compensation and sequential gating was performed with FlowJo software (FlowJo LLC, Ashland, OR). Populations of myeloid cells that were identified included macrophages, dendritic cells, granulocytic myeloid derived suppressor cells (G-MDSC), monocytic myeloid derived suppressor cells (M-MDSC) and M0, M1 and M2 macrophage phenotypes (Supplementary Fig. S1).
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3

Neutrophil FcγRIII Expression Analysis

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Neutrophils were enriched from the bone marrow of K/BxN mice using the EasySep mouse neutrophil enrichment kit. Neutrophils were incubated with or without 100 μg/mL of rFc-µTP-L309C for 30 min at 37°C and stained for Ly6G-APC, CD11b-FITC (BioLegend), and FcγRIII-PE (Thermo Fisher Scientific). FcγRIII staining was analyzed by flow cytometry on a BD LSR Fortessa, and the data were analyzed by using FlowJo software.
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4

Hamster PBMC Isolation and Activation

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Hamster peripheral blood mononuclear cells (PBMCs) were isolated from ethylene diamine tetraceticacid (EDTA) whole blood by overlay on a Histopaque®-1077 density cushion and separated according to manufacturer’s instructions. Tissues were processed into single cell suspensions as described previously (44 (link)). Cells were stimulated for 6 hours with media alone, cell stimulation cocktail (containing PMA-Ionomycin, Biolegend), 1μg/ml SARS-CoV-2 S peptide pool (IDT), or Lassa virus (LASV) GPC peptide pool (IDT) together with 5μg/ml Brefeldin A (Biolegend). Following surface staining with Live/Dead-APC/Cy7, CD4-FITC, CD8-Alexa700, CD94-BV421 and CD69-PeCy7, B220-BV605, CD11b-PerCPCy5.5, and Ly6G-APC (all Biolegend) cells were fixed with 4% paraformaldehyde (PFA). Sample acquisition was performed on a FACSSymphony-A5 (BD), and data analyzed in FlowJo V10. Cell populations were identified by initially gating on Live/Dead negative, doublet negative (SSC-H vs SSC-A). Activation positive responses are presented after subtraction of the background responses detected in the LASV GPC peptide pool-stimulated samples.
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5

Hamster PBMC Isolation and Immune Response

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Hamster PBMCs were isolated from ethylene diamine tetraceticacid (EDTA) whole blood by overlay on a Histopaque®−1077 density cushion and separated according to manufacturer’s instructions. Tissues were processed into single cell suspensions as described previously (Barrigan et al., 2013 (link)). Cells were stimulated for 6 hours with media alone, cell stimulation cocktail (containing PMA-Ionomycin, Biolegend), 1μg/ml SARS-CoV-2 S peptide pool, or Lassa virus (LASV) GPC peptide pool together with 5μg/ml Brefeldin A (Biolegend). Following surface staining with Live/Dead-APC/Cy7, CD4-Alexa700, CD8-FITC, CD94-BV421 and CD69-PeCy7, B220-BV605, CD11b-PerCPCy5.5, and Ly6G-APC (all Biolegend) cells were fixed with 4% paraformaldehyde (PFA). Sample acquisition was performed on a FACSSymphony-A5 (BD), and data analyzed in FlowJo V10. Cell populations were identified by initially gating on Live/Dead negative, doublet negative (SSC-H vs SSC-A). Activation positive responses are presented after subtraction of the background responses detected in the LASV GPC peptide pool-stimulated samples.
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6

Neutrophil CXCR2 Expression After LPS-Induced Airway Inflammation

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For CXCR2 expression on the surface of neutrophilic analysis, 10 μg LPS was intratracheally induced into the airways of WT, IL‐33−/− and ST2−/− mice. Twenty‐four hours later, approximately 300 μL whole blood of LPS‐treated mice was collected into sterile tubes containing 100 μL EDTA (15 g L−1) and then incubated with 3 mL RBC lysis buffer (00‐4333, Invitrogen) at 4 °C for 5 min. Subsequently, BALF was harvested as previously described. Both blood cells and BALF cells were washed with sterile PBS twice for flow cytometry analysis. Cells were stained with the fixable viability dye Zombie NIR (423105, BioLegend) for 15 min. Subsequently, cells were labelled with CD45‐PE/Cy7 (103114, BioLegend), Ly6G‐APC (108412, BioLegend), CD11b‐BV510 (101263, BioLegend) and CXCR2‐FITC (149310, BioLegend) after blocking the Fc receptor (FcR) with CD16/CD32 antibody (14‐0161‐85, eBioscience). CD45+ Ly6G+ CD11b+ cells were identified as neutrophils.
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7

Dissecting and Sorting Mouse Lung Cells

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Mouse lung or tumors were dissected and enzymatically digested for 30 min while being shaken at 37°C in a digestion mix containing 0.25% collagenase II (Gibco) and 1 U/ml dispase (Gibco) in PBS. Cell suspensions were filtered through a 100-μm cell strainer followed by washing with 1% FCS in PBS. Antibodies used were as follows: CD31-PE (MCA2388PE; Serotec), CD45-APC (17-0451; eBioscience), CD4-PeCy7 (25-0041; eBioscience), CD8-PerCp-Cy5.5 (45-0081; eBioscience), CD45-FITC (553079; BD), CD19-PE (12-0193; eBioscience), Ly6G-APC (127613; Biolegend), F4/80-APC-efluor 780 (47-4801; eBioscience), CD206-PE (MCA2235PET; AbD Serotec), CD11c-FITC (557400; BD), CCR2-APC (150627; Biolegend). Cells were sorted on an S3e cell sorter (BioRad) or FACSCanto (BD).
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8

Isolation and Analysis of Cardiac Immune Cells

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Mouse hearts were dissected and cut into small pieces following 10 ml ice-cold PBS perfusion. Tissues were then processed for enzymatic digestion with 450 U/ml collagenase I, 125 U/ml collagenase XI, 60 U/ml DNase I, and 60 U/ml hyaluronidase (all Sigma-Aldrich) for 1 h at 37°C with agitation. Subsequently, the heart tissues were triturated and passed through 70 μm cell strainers (BD Falcon), washed, and centrifuged to obtain single-cell suspensions. Next, cells were first enriched for CD11b+ cells by using Miltenyi CD11b microbeads and MACS columns according to the manufacturer’s instructions. Then the enriched CD11+ cells were stained with antibodies for FACS analysis. The antibodies used were as follows: CD45-APC/Cyanine7 (BioLegend), Ly6G-APC (BioLegend), F4/80-PE (Invitrogen), and Ly6C-BV421 (BioLegend) at 4°C for 30 min. DAPI (ThermoFisher Scientific) was used as a cell viability marker. Flow cytometric analysis and cell sorting were conducted by using a FACSAria™ cell sorter (BD Biosciences). Data were analyzed with FlowJo software.
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9

Poly-A Particle Toxicity Evaluation

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Select groups of mice received a ‘long-term’ dosage of Poly-A. Mice received a daily tail vein injection of 2 × 108 (~1 µm) Poly-A particles in 100 µL sterile phosphate-buffered saline (PBS). Control mice received either an equivalent amount of PBS (‘saline’) alone or ‘free aspirin’—salicylic acid. Mice were weighed and underwent health scoring daily before euthanasia on the fifth day. At the time of euthanasia, a cardiac puncture blood draw was administered, and the liver was harvested. Blood was immediately placed on ice, blocked with 1 µL FC-receptor block (BioLegend #101320) for 10 min. Samples were then stained with 0.1 µg/mL CD45-BV711 (Biolegend #103147), 0.25 µg/mL CD11b-FITC (Biolegend #101206), and 0.1 µg/mL Ly6G-APC (Biolegend #127614) and lyse/fixed (eBioscience) before using an Attune flow cytometer to analyze circulating leukocyte populations. The liver was added to RPMI media with collagenase and DNAse and dissociated using a gentleMACS Dissociator (Miltenyi Biotec). The dissociated liver was strained, centrifuged, and the supernatant was utilized in an aspartate aminotransferase (AST) activity assay (Sigma Aldrich).
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10

Murine Corneal and Immune Cell Profiling

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All the cells were incubated with Fc block (Biolegend) for 15 min at room temperature before staining for specific markers. Two million corneal and conjunctival cells were stained for 30 min with CD45 FITC, LY6G APC, CD11b PE (Biolegend). Bone marrow cells were stained with the following panel of antibodies CD3e BUV395, CD19 BV650, c-Kit BV711, CD11b FITC, Ly6G PE, Ter119 PECy7, Ly6C APC, F4/80 APC/Cy7 (BD Biosciences). Appropriate isotypes were used as negative controls. Stained cells were washed with PBS and analyzed on LSR-II flow cytometer (BD Biosciences). The data acquired from LSR-II were analyzed by Summit.
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