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9 protocols using trypsin inhibitor from glycine max

1

Silanized Glass Slide Functionalization

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Aldehyde-silanized glass slides (Nexterion® Aldehyde AL, Schott), Sigmacote® (Sigma-Aldrich), Slygard® 184 (Fisher Scientific), sodium borohydride (NaBH4, ACROS, 98%), Pluronic® F108 NF (BASF), ethanol (Fisher Scientific), trypsin inhibitor from Glycine max (Sigma-Aldrich), Matrigel® (BD Biosciences), rat-tail collagen 1 (BD Biosciences), Turbo DNase (Life Technologies), amine-modified ssDNA (5′-amine-X20, Operon), PBS (UCSF Cell-Culture Facility), PBS-CMF (UCSF Cell-Culture Facility), trypsin (UCSF Cell-Culture Facility), 100x penicillin/streptomycin, heat-inactivated fetal bovine serum (UCSF Cell-Culture Facility), RPMI media (UCSF Cell-Culture Facility) were used as received without further purification. Lipid-modified ssDNA (5′-lipid-T80-X20) was synthesized as previously described17 (link).
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2

Isolation of Mesenteric Artery Myocytes

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Third- and fourth-order mesenteric arteries were carefully cleaned of surrounding adipose and connective tissues, dissected, and held in ice-cold dissecting solution (Mg2+-PSS; 5 mM KCl, 140 mM NaCl, 2 mM MgCl2, 10 mM glucose, and 10 mM HEPES adjusted to pH 7.4 with NaOH). Arteries were first placed in dissecting solution supplemented with 1.23 mg/ml papain (Worthington Biochemical, Lakewood, NJ) and 1 mg/ml DTT for 14 min at 37°C. This was followed by a second 5 min incubation in dissecting solution supplemented with 1.6 mg/ml collagenase H (Sigma-Aldrich, St. Louis, MO), 0.5 mg/ml elastase (Worthington Biochemical), and 1 mg/ml trypsin inhibitor from Glycine max (Sigma-Aldrich) at 37°C. Arteries were rinsed three times with dissection solution and single cells were obtained by gentle trituration with a wide-bore glass pipette. Myocytes were maintained at 4°C in dissecting solution until used.
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3

Silanized Glass Slide Functionalization

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Aldehyde-silanized glass slides (Nexterion® Aldehyde AL, Schott), Sigmacote® (Sigma-Aldrich), Slygard® 184 (Fisher Scientific), sodium borohydride (NaBH4, ACROS, 98%), Pluronic® F108 NF (BASF), ethanol (Fisher Scientific), trypsin inhibitor from Glycine max (Sigma-Aldrich), Matrigel® (BD Biosciences), rat-tail collagen 1 (BD Biosciences), Turbo DNase (Life Technologies), amine-modified ssDNA (5′-amine-X20, Operon), PBS (UCSF Cell-Culture Facility), PBS-CMF (UCSF Cell-Culture Facility), trypsin (UCSF Cell-Culture Facility), 100x penicillin/streptomycin, heat-inactivated fetal bovine serum (UCSF Cell-Culture Facility), RPMI media (UCSF Cell-Culture Facility) were used as received without further purification. Lipid-modified ssDNA (5′-lipid-T80-X20) was synthesized as previously described17 (link).
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4

Isolation and Functional Assessment of Rat Islets

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Islets of Langerhans were isolated from euthanized adult male Sprague Dawley rats by retrograde perfusion of the pancreas79 (link) with 0.5 mg/ml collagenase from Clostridium Histolyticum (Sigma, St. Louis, MO) in HBSS (Gibco) supplemented with 5 mM HEPES. The excised pancreas was transferred to HBSS containing 5 mM HEPES, 5 mM glycine and 0.165 mg/ml trypsin inhibitor from Glycine max (Sigma) and placed in 37 °C water bath until tissue was readily dissociated when shaken by hand. Digestion was terminated by addition of ice-cold HBSS with 0.4% BSA. Tissue was passed through a size 40 sieve and washed 3 times by centrifugation at 200 g for 10 s followed by gradient centrifugation in Histopaque®-1077 at 1000 g for 25 min. The islets were washed twice and handpicked under a stereomicroscope. Islets where cultured for 18 h in RPMI1640 medium containing 11 mM glucose, 10% FBS and 1% penicillin/streptomycin in a humidified atmosphere at 37 °C with 5% CO2 in air. 11–30 islets were transferred to 300 μl KRBH in low glucose for 2 h prior to addition of the indicated glucose concentrations alone or in the presence of BzATP (10 μM) or AZ10606120 (10 μM). Insulin release was taken as the difference between insulin in the supernatant obtained before addition of test compounds and 30 min after addition. Samples were handled as described above.
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5

Isolation of Mesenteric Arterial Myocytes

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Third and fourth-order mesenteric arteries were carefully cleaned of surrounding adipose and connective tissues, dissected, and held in ice-cold dissecting solution (Mg2+-PSS; 5 mM KCl, 140 mM NaCl, 2mM MgCl2, 10 mM glucose, and 10 mM HEPES adjusted to pH 7.4 with NaOH). Arteries were first placed in dissecting solution supplemented with 1.23 mg/ml papain (Worthington Biochemical, Lakewood, NJ) and 1 mg/ml DTT for 14 minutes at 37°C. This was followed by a second 5-minute incubation in dissecting solution supplemented with 1.6 mg/ml collagenase H (Sigma-Aldrich, St. Louis, MO), 0.5 mg/ml elastase (Worthington Biochemical, Lakewood, NJ), and 1 mg/ml trypsin inhibitor from Glycine max (Sigma-Aldrich, St. Louis, MO) at 37°C. Arteries were rinsed three times with dissection solution and single cells were obtained by gentle trituration with a wide-bore glass pipette. Myocytes were maintained at 4°C in dissecting solution until used.
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6

Purification and Preparation of Protein Standards

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Ubiquitin from bovine erythrocytes (UniProt Accession P62992), lysozyme from chicken egg whites (UniProt Accession P00698), and myoglobin from horse heart (UniProt Accession P68082) were purchased as standards from Protea Biosciences (Morgantown, WV), product numbers PS-143, PS-123, and PS-124, respectively). Trypsin inhibitor from glycine max (UniProt Accession P01070) was purchased from Sigma Aldrich (St. Louis, MO), product number T9003. Due to the presence of multiple disulfide bonds, lysozyme and trypsin inhibitor were resuspended in buffer (8 M urea, 50 mM Tris, pH 8), reduced with 5 mM dithiothreitol for 45 minutes at 58 °C, alkylated with 15 mM iodoacetamide for 45 minutes at room temperature in the dark, and desalted using a C2 SepPak (Waters, Milford, MA). All samples were resuspended at ~10 pmol/μL in 49.9:49.9:0.2 acetonitrile/water/formic acid prior to infusions.
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7

Microdissection of Renal Distal Convoluted Tubules

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Manual microdissection of distal convoluted tubules was conducted according to a previously published protocol [47 (link)]. After perfusion of anesthetized mice with MEM media (GibcoBRL, Ref number 11058021) via left ventricle, the kidney was sagittally cut into two halves and the medulla was excised. Cortex was sliced into 1-mm thin sections that were then incubated in a digestion solution containing 4 ml MEM, 5 mM glycine, 6 mg/ml trypsin inhibitor (Trypsin inhibitor from Glycine max, Sigma-Aldrich, T9128), and 250 μg/ml collagenase (Collagenase from Clostridium histolyticum, Sigma-Aldrich, C9891), pH 7.4 at 37 °C for 25 min without shaking. The digested cortex sections were subsequently washed with ice-cold HEPES solution (NaCl 125 mM, KCl 3 mM, MgSO4 1.2 mM, CaCl2 1 mM, KH2PO4 2 mM, glucose 5 mM, HEPES 32.2 mM), and the renal DCTs were manually microdissected under a stereomicroscope based on their distinct morphological characteristic.
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8

Protein Sample Preparation for MS

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The proteins β-lactoglobulin from bovine milk, ribonuclease A from bovine pancreas, α-lactalbumin from bovine milk, trypsin inhibitor from glycine max, and m-nitrobenzyl alcohol (mNBA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Lysozyme from chicken white egg was acquired from EMD Millipore (Darmstadt, Germany). LC/MS-grade water, methanol and formic acid were obtained from Fisher Chemical (Hampton, NH). All proteins were used without further purification. Protein samples were prepared in 49.5:49.5:1 water/methanol/formic acid to a final concentration of 10 or 20 μM. Supercharging agent mNBA was added to the ribonuclease A and α-lactalbumin solutions at a 0.25% (v/v) concentration.
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9

Production and Characterization of BlaM1 VLPs

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A/WSN/33-based VLPs harboring β-lactamase-M1 (BlaM1) fusion proteins were produced essentially as described by Tscherne & Garcìa-Sastre42 (link). Briefly, HEK 293 T cells seeded onto poly-L-lysine-coated (Sigma-Aldrich) 6-well plates were transfected in Opti-MEM (Life Technologies) with 2 μg BlaM1, 500 ng pCAGGS-WSN-HA, 500 ng pCAGGS-WSN-NA per well using ViaFect (Promega) as the transfection reagent (3 µl ViaFect/µg DNA). Medium was exchanged 6 h post-transfection with Opti-MEM (Life Technologies) containing 1% penicillin-streptomycin. VLPs were collected 72 h after transfection and treated with 5 μg/mL TPCK-trypsin (Sigma-Aldrich) for efficient HA cleavage. Trypsin was inactivated with 10 μg/mL trypsin inhibitor from Glycine max (Sigma-Aldrich). Prior to infection, MDCK cells were treated with the indicated concentrations of the GRK2 inhibitor for 1 h. For infection of MDCK cells in 24-well plates, 200 μl BlaM1 VLPs were added to the cells in the presence of the compound and incubated for 4 h at 37 °C. Cells were harvested by trypsinization and incubated with the florigenic substrate CCF2-AM (ThermoFisher Scientific). Cells were analyzed on a FACSVerse System (BD) and dead cells excluded by a live/dead staining (LIVE/DEAD Fixable Near-IR Dead Cell Stain Kit, ThermoFisher Scientific).
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