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4 protocols using anti mouse alexafluor 647

1

Comprehensive Antibody Panel for Immunoanalysis

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The following primary antibodies were used for flow cytometry: anti-MICA (clone 159227; R&D Systems), anti-MICB (clone 236511, R&D Systems), anti-ULBP1 (clone 170818; R&D Systems), anti-ULBP2/5/6 (clone 165903; R&D Systems) and anti-ULBP3 (clone 166514, R&D Systems).
The following primary antibodies were used for immunofluorescence: anti-PDI (ab3672, Abcam), anti-FLAG tag (Clone L5, Biolegend) and anti-MICA (clone 159227, R&D Systems).
The following primary antibodies were used for western blotting: anti-MICA (Clone EPR6568, Abcam), anti-FLAG tag (Clone L5, Biolegend), anti-GAPDH (clone 6C5, Santa Cruz) and anti-vinculin (clone EPR8185, Abcam).
The following secondary antibodies were used: anti-mouse AlexaFluor 647, anti-mouse PE, anti-mouse biotin, anti-rabbit biotin, anti-rat biotin, anti-rabbit Cy3, anti-rat 488, streptavidin-AlexaFluor 647, streptavidin-horseradish peroxidase (HRP), anti-mouse-HRP, anti-rat-HRP and anti-rabbit-HRP, all purchased from Jackson Laboratories.
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2

Multiparameter Flow Cytometry of SVF

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SVF was resuspended in 1% BSA PBS solution and analyzed by flow cytometry. Briefly, SVF was stained with the following antibodies: CD45.2-PerCP (eBioscience; catalog 45-0454-80); F4/80-PE (eBioscience; catalog 12-4801-80); CD11b-APC eFluor 780 (eBioscience; catalog 47-0112-80); CD11c-PE-Cy7 (eBioscience; catalog 25-0114-81); CD206-Alexa Fluor™ 488 (Invitrogen; catalog 53-2061-80); CD301–Alexa Fluor 647 (AbD Serotec; catalog MCA2392A647T); CD31-FITC (Invitrogen; catalog RM5201); CD34-PE (Invitrogen; catalog MA5-17831); anti-Pref-1 antibodies (R&D; catalog MAB8634) and (Invitrogen; catalog MA5-15915); anti-PAR2 antibody (Abcam; catalog 180953); anti-MIF antibody (ab187064; Abcam); anti-Rabbit Alexa Fluor® 488 (Jackson ImmunoResearch; catalog 711-545-152); anti-Rabbit Alexa Fluor™ 647 (Invitrogen; catalog A-21244); anti-Mouse Alexa Fluor® 647 (Jackson ImmunoResearch; catalog 715-605-150). Flow cytometry was performed on a CytoFLEX flow cytometer (Beckman Coulter) and the data were analyzed by using FlowJo v10 software (Becton Dickinson).
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3

Immunofluorescence Imaging of Transfected AGS Cells

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Transfected AGS cells were fixed with 4% paraformaldehyde in PBS 1x (Gibco, Carlsbad, CA, USA) for 20 min at room temperature and washed three times with PBS 1x. The cells on coverslips were mounted on glass slides using Vectashield (Vector Laboratories, Newark, CA, USA). AGS cells transfected with GFP-plasmids were directly observed with the microscope, while AGS cells transfected with the CagA1-1216 construct, after fixation, were blocked with 1% BSA in PBS 1x for 30 min, then incubated with mouse anti-CagA (Sc-28368; Santa Cruz, CA, USA) for 1 h at 37°C, followed by incubation with anti-mouse Alexa Fluor 647 (#715-605-150; Jackson ImmunoResearch Laboratories, West Grove, PA, USA) for 40 min at room temperature. Cells on coverslips were mounted on glass slides using Vectashield.. Images were acquired with a Nikon Eclipse Ti confocal laser scanning microscope (Nikon Corp) with a 20x objective.
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4

Immunostaining of ER-Catalase Localization

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INS-1E cells expressing ER-Catalase N244 or WT catalase without an ER-specific targeting signal were seeded at a density of 100 000 cells/well on LabTek chamber slides (Nunc, Roskilde, Denmark). After 48 h, the cells were washed twice with PBS and subsequently fixed with 4% paraformaldehyde at room temperature for 1 h. After washing, the cells were permeabilised and blocked with PBS containing 0.2% Triton X-100 and 1% BSA. The cells were incubated with primary antibodies (anti-PDI, ab5484, Abcam, Cambridge, UK, 1:100 dilution; anticatalase, 100-4151, Rockland Immunochemicals, Inc., Limerick, PA, USA, 1:500 dilution) diluted in PBS containing 0.1% Triton X-100 and 0.1% BSA at room temperature for 1 h. Thereafter the cells were washed with PBS and incubated with specific secondary antibodies (anti-mouse-Alexa Fluor 647, or anti-rabbit-Alexa Fluor 488, Jackson ImmunoResearch Laboratories, West Grove, PA, USA; 1:200 dilutions) for 1 h in the dark. Afterwards the cells were washed and the nuclei were counterstained with 300 nM DAPI for 5 min at room temperature. Finally, the cells were washed and mounted with Mowiol/DABCO anti-photobleaching mounting media (Sigma). Stained cells were examined with an Olympus IX81 inverted microscope (Olympus) and microscopic images were post-processed using AutoDeblur and AutoVisualize (Autoquant Imaging, New York, NY, USA).
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