The largest database of trusted experimental protocols

172 protocols using dual pam 100

1

Chlorophyll Fluorescence Kinetics Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The kinetics of chlorophyll (Chl) fluorescence was measured with Dual-PAM-100 or PAM-100 (Heinz Walz, Effeltrich, Germany). A transient post-illumination increase in Chl fluorescence in Arabidopsis leaves was measured after the termination of actinic light (120 μmol photons m−2 s−1 for 2 min) using a PAM 100 as previously described (Kofer et al., 1998 (link)).
The Data Acquisition Software installed in a computer connected to Dual-PAM-100 automatically calculates the Chl fluorescence parameters, Yield (II), NPQ, and Yield (I).
Fd-dependent PQ reduction activity in ruptured chloroplasts was detected by increases in Chl fluorescence by adding NADPH (0.25 mM) and Fd (5 mM) under the illumination of weak measuring light (1.0 μmol m−2 s−1) using a PAM 100, as described by a previous study (Endo et al., 1998 (link)).
The redox state of P700 was measured with a PAM chlorophyll fluorometer (Walz, Effeltrich, Germany) equipped with an emitter-detector ED-P700DW-E unit. P700 absorbance changes were monitored by absorbance at 810–830 nm (Schreiber et al., 1986 (link); Klughammer and Schreiber, 1998 (link)). An initial reduction rate (0–1 s) of P700+ was estimated as CET activity (Wu et al., 2011 (link)).
+ Open protocol
+ Expand
2

Chlorophyll Fluorescence and PSI Measurements

Check if the same lab product or an alternative is used in the 5 most similar protocols
The kinetics of induction of Chl a fluorescence in WT and mutant leaves were measured using a pulse-modulated fluorometer (Imaging PAM and DUAL-PAM100; Walz). Leaves, dark adapted for at least 15 min, were used to analyze minimal (F0) and maximal (Fm) fluorescence yields, the latter being determined by application of a saturating light pulse (1 s duration, 1000 μmol photons m−2 s−1, 4 min illumination between each pulse). The potential maximum quantum yield of PSII was measured as (FmF0)/Fm=Fv/Fm (Schreiber et al., 1988).
PSI yield in leaves was measured as absorption changes at 820 nm induced by saturating pulses and far-red light (12 W m−2 as measured with a YSI Kettering model 65 A radiometer) in the absence or presence of actinic light as indicated using the DUAL-PAM100 (Klughammer, 1994 ). The size of the intersystemic plastoquinone pool was calculated as the ratio of the areas induced by a single and multiple turnover flashes causing a single charge separation and the reduction of the entire plastoquinone pool, respectively (Schreiber, 1988 ) Other parameters were calculated using the algorithms provided in the DUAL-PAM100 software (Walz).
+ Open protocol
+ Expand
3

Mutagenesis and Chlorophyll Fluorescence Screening

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mutagenesis and chlorophyll fluorescence screening of soq1 npq4 suppressors was performed as previously described17 (link). Chlorophyll fluorescence measurements were determined at room temperature using an Imaging-PAM Maxi (Walz) or Dual-PAM-100 (Walz) fluorometer. False-colored fluorescence images and their respective Fo, Fm, and Fv/Fm values were determined using the Imaging-PAM Maxi, while NPQ induction and relaxation were determined using the Dual-PAM-100. Plant material was dark acclimated for 30 min prior to measurement unless stated otherwise. Maximum fluorescence levels after dark acclimation (Fm) and throughout an NPQ measurement (Fm’) were recorded after applying a saturating pulse of light. NPQ, calculated as (Fm-Fm’)/Fm’, was induced for 10 min with 1,200 μmol photons m−2 s−1 and relaxed for 10 min in the dark.
+ Open protocol
+ Expand
4

Photosynthetic Electron Transport Measurements

Check if the same lab product or an alternative is used in the 5 most similar protocols
We used a Dual-PAM 100 measuring system (Heinz Walz, Effeltrich, German) to measure PSI and PSII parameters under atmospheric CO2 condition. After illumination at 1455 μmol photons m−2 s−1 for 5 min to activate photosynthetic electron sinks, leaves were exposed to FL alternating between low light (59 μmol photons m−2 s−1, 2 min) and high light (1455 μmol photons m−2 s−1, 1 min). PSI parameters were calculated as follows: Y(I) = (Pm’ − P)/Pm; Y(ND) = P/Pm; Y(NA) = (PmPm′)/Pm. Y(I), the quantum yield of PSI photochemistry; Y(ND), the quantum yield of PSI non-photochemical energy dissipation due to donor side limitation; Y(NA), the quantum yield of PSI non-photochemical energy dissipation due to acceptor side limitation. PSII parameters were calculated as follows: Y(II) = (Fm′ − Fs)/Fm′; NPQ = (FmFm′)/Fm′; Y(NO) = Fs/Fm. Y(II), the effective quantum yield of PSII photochemistry; NPQ, non-photochemical quenching in PSII; Y(NO), the quantum yield of non-regulatory energy dissipation in PSII. The relative photosynthetic electron transport rate through PSI and PSII were calculated as: rETRI = PPFD × Y(I) × 0.84 × 0.5; rETRII = PPFD × Y(II) × 0.84 × 0.5. rETRI minus rETRII is assumed to be the rate of CEF.
+ Open protocol
+ Expand
5

Measuring Photosynthetic Proton Gradients

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Dual-PAM 100 equipped with a P515/535 emitter-detector module (Heinz Walz) was used measure the electrochromic shift (ECS) signals. After light adaptation at 1455 μmol photons m−2 s−1 for 5 min, leaves were illuminated at 59 μmol photons m−2 s−1 for 2 min. Afterwards, light intensity was changed to 1455 μmol photons m−2 s−1, and ECS dark interval relaxation kinetics (DIRKECS) were recorded after this light transition for 10 s or 60 s. The proton gradient (ΔpH) component of proton motive force were calculated using DIRKECS [50 (link),51 (link)]. The chloroplast ATP synthase activity (gH+) was estimated as the inverse of the decay time constant of the first-order ECS relaxation [52 (link)].
+ Open protocol
+ Expand
6

Chlorophyll Fluorescence and Absorbance Measurement

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were suspended with liquid TP medium at 20 μg chlorophyhll·mL−1 before measurement. Chlorophyll fluorescence measurement was performed with a DUAL-PAM-100 (Walz, Effeltrich, Germany). For the measurement of light-induced absorbance changes at 705 nm, the cell suspension was mixed with the same volume of TP medium containing 20% (w/v) Ficol, and DCMU (1 μM) and DBMIB (1 μM) were added just before measurement. The samples were placed for 30 s in the darkness in a sample cuvette holder and illuminated with an orange actinic light at an intensity of 82 μmol photons m−2 s−1 for 5 s, followed by darkness for 5 s. The absorbance changes were recorded with a JTS-10 (BioLogic, Seyssinet-Pariset, France) using the following sequence program: 3(10msD)5s2(10ms)10msI{200µs,35,5s,J200µsD15µsI}20µsJ200µsD{2ms,35,5s,D}50msD.
+ Open protocol
+ Expand
7

Chlorophyll Fluorescence Measurements in Chlamydomonas

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chlorophyll fluorescence measurements were performed using a DUAL-PAM-100 (Walz). Chlamydomonas cells growing autotrophycally in HSM medium were incubated with DCMU or GLA for the indicated time, and then 2 mL of cells (∼2 × 106 cells mL−1) was used to determine relative electron transport rate (rETR) and maximum photochemical efficiency (Fv/Fm). Cells were dark adapted for 15 min with constant stirring to obtain the Fv/Fm ratio. Cells were then exposed to 50 μmol photons m−2 s−1 for 5 min to quantify rETR values.
+ Open protocol
+ Expand
8

Redox Kinetics of P700 in Light

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Dual-PAM 100 (Heinz Walz, Effeltrich, Germany) was used to measure the redox kinetics of P700 upon dark-to-light transition. After the mature leaves were adapted to dark conditions for at least 1 h, they were suddenly exposed to actinic light (1455 μmol photons m−2 s−1) and the redox changes in P700 were measured over 16 s. To measure P700 under anaerobic conditions, the detached leaves were induced in nitrogen for at least 1 h.
+ Open protocol
+ Expand
9

Measuring Photosynthetic Processes in Vivo

Check if the same lab product or an alternative is used in the 5 most similar protocols
The chlorophyll fluorescence of PSII and the redox state of P700, an indicator of PSI activity, were measured in vivo concomitantly at room temperature using a Dual-PAM-100 fluorometer (Walz) connected to a PC with WinControl software. After dark adaptation of the leaves for 20 min, experiments were carried out by using the automated induction and recovery curve routine in the Dual-PAM software, with repetitive application of saturation pulses for the assessment of fluorescence and P700 parameters from which the quantum yields of PSI and PSII were calculated by the software. The fluorescence parameters were calculated as follows: Fv/Fm = (Fm-Fo)/Fm, Y (II) = (Fm'-F)/Fm' (Genty et al. 1989 (link)), Y (NO) = 1/ (NPQ + 1 + qL (Fm/Fo-1) (Kramer et al. 2004 (link)), Y (NPQ) = 1-Y (II) -1/(NPQ + 1 + qL (Fm/Fo-1) (Kornyeyev and Hendrickson 2007 (link); Kramer et al. 2004 (link)), Y (I) = 1- Y (ND) -Y (NA), Y (ND) = 1-P700 red, Y (NA) = (Pm-Pm') /Pm.
+ Open protocol
+ Expand
10

Chlorophyll Fluorescence Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chlorophyll fluorescence was measured using a Dual Pam-100 (Heinz Walz). Samples were placed into a cuvette under constant stirring at room temperature and were dark-adapted for 5–10 min before measurements. Light curves were recorded by increasing stepwise (3 min per step) the light intensity from 15 to 715 µmol photons m−2 s−1. Saturating flashes (10,000 µmol photons m−2 s−1, 200 ms duration) were applied to determine PSII yield, 1-qP, and ETRs [57 (link), 58 ].
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!