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46 protocols using propidium iodide

1

Apoptosis and Cell Cycle Analysis

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For cell apoptosis, cells were transfected with siRNAs or plasmids were cultured for 48 h and harvested through trypsinization. Then, the cells were resuspended with PBS and the concentration of cells adjusted to 1 × 106 cells/ml before staining. After staining the cells with propidium iodide and Annexin V-fluorescein isothiocyanate (Yeasen, Shanghai, China) for an hour on ice light aversion, cell apoptosis could be examined with a flow cytometry system (Beckman, Brea, CA, USA).
For cell-cycle detection, K1 and TPC1 cells transfected with siFOXP4-AS1 for 48 h were synchronized by starving in the G0/G1 phase, then fixed in precooled 75% ethanol and stained with propidium iodide (Yeasen). The DNA content of G0/G1, S, and G2/M phases in the cell cycle was examined through flow cytometry (Beckman). Triplicate independent tests were repeated.
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Apoptosis and Cell Cycle Analysis

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Apoptotic cell death was assessed using annexin V/PI staining (Yeasen, Shanghai, China). Transfected cells were fixed in 75% ethanol at 4 °C for 12 h and stained with propidium iodide (PI) (Yeasen) solution for cell cycle analysis. The proportion of cells in each cell cycle phase was analyzed using a CytoFlex cytometer (Beckman Coulter, USA). All data were analyzed using the FlowJo V10 software.
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3

Apoptosis Evaluation by Flow Cytometry

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Flow cytometry was used to evaluate cell apoptosis. The cells after transfection with Si-MYL4, Si-NC, PCDNA3.1-MYL4, and PCDNA3.1 were collected, and then 1 mL of ice-cold PBS was added to wash the cells. Then, 100 μL of binding buffer was added to disperse the cells, and the collected cells were treated with 5 μL Annexin V-FITC and 10 μL propidium iodide (Yeasen, Shanghai, China) in the dark for 15 min at 37 °C. Finally, the treated cells were added to 400 μL 1 × Binding Buffer and measured using Cytek DxP Athena flow cytometry (Cytek, Fremont, CA, USA).
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4

Apoptosis Analysis by Flow Cytometry

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A total of six groups of cells from the two cell lines were washed twice with cold PBS and resuspended in a 1 × 106/ml cell suspension. Then, 100 μl of the cell suspension was incubated with 5 μl of FITC-Annexin V (Shanghai Yaji Biotechnology Co., Ltd., Shanghai, China) and 5 μl of propidium iodide (Shanghai Yeasen Biotechnology Co., Ltd., Shanghai, China) at room temperature in the dark for 15 min. SA-FLOUS solution was added, and the mixture was incubated at 4 °C for 20  min. Flow cytometry was used to detect the apoptosis rate. The experiment was repeated thrice, and the average value was calculated.
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5

Cell Cycle Analysis of TGFβ1-Treated Cells

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The transfected cell suspension exposed to TGFβ1 underwent fixation with 70% ethanol at 4 ℃ overnight. Next, the cells were stained with a solution containing propidium iodide (PI; Shanghai Yeasen Biotechnology Co., Ltd.), and 100 µL of Ribonuclease A (RNase A) for 30 min at 37 ℃. Finally, a flow cytometer (Partec, Arlesheim, Switzerland) was used to analyze cell cycle distribution.
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6

Apoptosis Quantification in HepG2 and MHCC97H Cells

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Cell apoptosis was performed on HepG2 and MHCC97H cells by flow cytometry. The cells were washed twice using washing buffer, and the suspensions were cultured with Annexin V-FITC and propidium iodide (Yeasen Biotechnology, Shanghai, China) in the dark at room temperature for 20 min. Next, binding buffer was added into each well. The samples were finally analyzed using FACS Calibur flow cytometer (BD Biosciences, San Jose, CA, USA) within 1 h.
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7

Subcellular Localization and Apoptosis Assay for Fon

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To analyze septation and subcellular localization, fresh conidia and mycelia of the Fon strains were washed with sterile ddH2O2 and co-stained with CFW or Hoechst 33342, respectively [9 (link)]. For apoptotic cell death analysis, the germ tubes of the Fon strains were treated with/without apoptosis-inducing compound farnesol (FOH; Shanghai Aladdin Bio-Chem, Shanghai, China) at 25 or 50 μM for 4 h at 26 °C. Necrotic cells and nuclei were co-stained with propidium iodide (PI; Shanghai Yeasen Biotech, Shanghai, China) and Hoechst 33342 (Shanghai Yeasen Biotech, China), respectively [35 (link),36 (link)]. To examine autophagy, the Fon strains were cultivated in liquid CM for 12 h, and the collected mycelia were rinsed with sterile ddH2O2. After washing, the mycelia were transferred into nitrogen-starved MM medium (MM-N) with/without 4 mM phenylmethanesulfonyl fluoride (PMSF; Sigma-Aldrich, St. Louis, MO, USA) for 1 h. The mycelia were stained with the fluorescent dye monodansylcadaverine (MDC; Sigma-Aldrich, St. Louis, MO, USA) for 30 min in the dark, followed by ddH2O2 washing [37 (link),38 (link)]. All aforementioned samples were observed under a Zeiss LSM 780 Meta confocal microscope (Gottingen, Niedersachsen, Germany) with the appropriate excitation and emission filters for corresponding dyes and signals.
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8

Annexin V-FITC/PI Apoptosis Assay

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Cell apoptosis was detected using Annexin V-FITC/PI Apoptosis Detection Kit (YEASEN, Shanghai, China). After a routine incubation in a 6-well culture plate for 48 h, adherent and suspended cells were harvested, washed twice with Phosphate Buffered Saline (PBS) and then resuspended with Binding Buffer. Subsequently, suspended cells were incubated for 10 min with Annexin V-FITC and propidium iodide (PI, Yeasen Biotechnology Co., Ltd., Shanghai, China) in a dark room for 15 min. Next, cell apoptosis assay was carried out by using FACScan flow cytometry (Becton Dickinson, Immunocytometry System, San Jose, CA).
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9

Apoptosis Analysis of ARPE-19 Cells

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ARPE-19 cells were grown in DMEM supplemented with 10% FBS for 12 h in a six-well plate, followed by treatment with HG and hypoxia for 24 h. The treated cells were collected (1 × 105 cells/mL) after digestion with pancreatic enzyme (Solarbio, Beijing, China) without ethylenediaminetetraacetic acid and then washed twice with pre-cooled phosphate-buffered saline (PBS). The cells were resuspended in 100 μL of binding buffer and stained with 5 μL Annexin V-FITC and 10 μL propidium iodide (Yeasen, Shanghai, China) for 15 min while protected from light for 15 min. Subsequently, 400 μL of binding buffer was added to resuspend the cells. The percentage of apoptotic cells was analyzed by flow cytometry (BD, FACSCalibur, United States).
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10

Cell Cycle Analysis of AGS and HGC-27 Cells

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AGS and HGC-27 cells (1x105) were seeded and incubated with vehicle or podofilox (3.4 nM) for 48 h. The cells were collected and incubated with 70% iced ethanol overnight. Cell cycle distribution was assessed using the propidium iodide (Shanghai Yeasen Biotechnology Co., Ltd.) staining kit, according to the manufacturers' protocols, and analyzed via flow cytometry.
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