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Facscalibur system

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The FACSCalibur system is a flow cytometry instrument designed for cell analysis and sorting. It utilizes laser technology to detect and measure multiple parameters of individual cells or particles in a fluid sample. The FACSCalibur system provides researchers with the capabilities to analyze cell populations, identify and quantify specific cell types, and sort cells based on their characteristics.

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906 protocols using facscalibur system

1

Cell Cycle and Apoptosis Analysis in HepG2 and SMMC7721 Cells

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HepG2 and SMMC7721 cells were treated with GA-A (100 and 75 µmol/l) respectively for 48 h. A total of 1.5×105 cells were seeded on 6 cm dishes in 1640 antibiotic-free medium containing 10% FBS. For cell cycle analysis, the treated cells were collected and washed twice with cold phosphate buffered saline (PBS). Then, the cells were collected and fixed in 70% cold ethanol overnight at 4°C, followed by incubation with 50 mg/l propidium iodide (PI) 100 mg/l RNase A (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany), and 0.1% Triton X-100 for 30 min at 37°C in the dark. The cells were analyzed by a flow cytometer (BD FACSCalibur System, BD Biosciences, Franklin Lakes, NJ, USA).
For cell apoptosis analysis, cells were harvested, washed twice and resuspended with cold PBS. Then the cells were treated with 5 µl Annexin V/fluorescein isothiocyanate (FITC), and 10 µl PI solution, and incubated at room temperature for 10 min in the dark. The results were analyzed by flow cytometry (BD FACSCalibur System, BD Biosciences) and the experiments were performed in triplicate.
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2

Analyzing Apoptosis and Cell Cycle

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Cell apoptosis was determined using the Annexin V-FITC Apoptosis Detection Kit. After treatment, Caco-2 cells were collected, centrifuged for 5 min at 1500 rpm, and then washed twice with PBS. Cells were resuspended in binding buffer with Annexin V and propidium iodide (PI) for 15 min, and then analyzed by flow cytometry (BD FACSCalibur™ system, San Jose, USA).
For cell cycle measurement, the treated Caco-2 cells were collected and centrifuged for 5 min at 1500 rpm. The cells were resuspended in 70% ice-cold ethanol and stored overnight at 4 °C. The ethanol-suspended cells were centrifuged, washed with PBS, and then incubated at 37 °C for 30 min with PI and RNAase solution. The cells were analyzed by flow cytometry (BD FACSCalibur™ system). Data were plotted and analyzed using ModFit Software (Verity Software House, Inc., Topsham, ME, USA).
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3

Cell Cycle Analysis and Apoptosis Assay for HCC Cells

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HCC cells were seeded at 2 × 105 per well in 6 well plates. After overnight incubation, cells were treated with siAGXT or siNC for 72 h. After treatment, HCC cells were digested using 0.25% pancreatic enzyme, washed twice with PBS, fixed in precooled 70% cold ethanol at 4 °C for 24 h. Cells were centrifuged again, washed with cold PBS twice, and stained with Propidium iodide (0.1 mg/ml) (Propidium iodide, PI; Beyotime) at 37 °C in the dark for 30 min. DNA contents were measured with a BD FACS Calibur system (BD Biosciences, Franklin Lake, NJ). Data were analyzed using ModFit LTTM software (Verity Software House, Topsham, ME). For apoptosis assay, cells were harvested, washed, and resuspended with PBS and stained with BD Annexin V-FITC Apoptosis Detection Kit. Data was acquired using a BD FACS Calibur system and BD FACSuite software (BD Biosciences).
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4

Cell Cycle Analysis of Apoptosis

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Apoptosis was determined by cell cycle analysis. For analysis of the cell cycle profile, MCF-7 cells (5 × 105 cells/60-mm dish) were cultured for 48 h in RPMI medium, and the cells were harvested after 12 or 24 h treatment with paroxetine by trypsinization and by centrifugation at 168× g (1000 rpm) for 5 min. The cells were then fixed in 70% (v/v) ethanol and washed with ice-cold PBS. Whole cells were incubated with propidium iodide (PI) staining solution (10 mM Tris (pH 8.0), 1 mM NaCl, 0.1% NP40, 0.5 μg/mL RNase, and 0.05 mg/mL PI) in the dark for 30 min at 37 °C. Cellular DNA content and apoptotic cells based on the PI signal and sub-G1 peak were measured using a FACSCalibur™ system (Becton Dickinson, San Jose, CA, USA) collecting 10,000 events per sample and analyzed using CellQuest Pro™ software (Becton Dickinson). For analysis of apoptotic and necrotic cell death, the cells were labeled using a FITC Annexin V Apoptosis Detection Kit I (BD Pharmingen™, San Diego, CA, USA). FITC-conjugated annexin V (5 µL) and PI (5 µL) were added in 100 µL of breast cancer cells (1 × 105), and then incubated for 15 min at room temperature in the dark. Following incubation, the cells were analyzed using a FACSCalibur™ system (Becton Dickinson).
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5

Cell Cycle Analysis of Metformin and INHBA

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After starvation for 24 h, cells were treated with metformin for 24 h or transfected with the INHBA OE plasmid or siRNA for 48 h. We collected the cells and fixed them with ice-cold 70% ethanol for 4 °C overnight, and stored them at −20 °C until analysis. The cells were then dyed with PI/RNase Staining Buffer (BD Biosciences, NJ, USA) and assessed by a fluorescence-activated cell sorting (FACS) Calibur system (BD Biosciences). The Annexin V assay was performed using FITC Annexin V/Dead Cell Apoptosis kit (BD Biosciences, NJ, USA). CRC cells were seeded in cell culture dishes at a density of 5 × 105 cells, incubated for 24 h, and subsequently treated with metformin or PBS for 24 h. The cells were collected and suspended in 1× annexin-binding buffer and stained with FITC and PI for 15 min at room temperature in the dark. the stained cells were analyzed by a FACS Calibur system (BD Biosciences).
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6

Flow Cytometry Analysis of Cell Ploidy

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The cell suspensions were fixed in 1% paraformaldehyde at RT for 15 min and then permeabilized (0.1% Triton X-100 in PBS) for 20 min, washed with DPBS twice, blocked in 0.5% BSA for 30 min at RT and incubated with primary antibodies at 4°C overnight. After the cells were washed in DPBS, they were incubated in secondary antibodies for 1 h at RT and then washed and filtered using a cell strainer with a 40 μm pore size (Becton Dickinson, USA). They were then resuspended in DPBS containing 1% FBS (HyClone) and subjected to flow cytometry. The results were analysed using a FACS-Calibur system (BD Biosciences, USA). To analyse DNA ploidy, the cells were fixed in 70% ethanol at 4°C overnight and then washed in DPBS. Then, the cells were incubated with the staining solution (0.02 mg/mL propidium iodide and 0.2 mg/ mL RNase A) at 37°C for 20 min and filtered before being subjected to flow cytometry. The results were analysed using a FACS-Calibur system (BD Biosciences).
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7

Quantification of CD54 Expression on Jurkat Cells

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CD54 levels on Jurkat cells were analyzed by direct immunofluorescence. Briefly, 1 x 106 cells were washed with PBS, 0.1% fetal bovine serum (FBS) and then incubated for 30 min at 4°C with anti-CD54-PE (BD Biosciences) in a 1:50 dilution. Cells were washed again with PBS, 0.1% FBS and analyzed on a FACSCalibur System (BD Biosciences). Ten thousand events were measured per analysis and subsequently exported to FlowJo7 (Tree Star). QuantiBRITE reference beads (BD Biosciences) were resuspended in 500 μl PBS, 0.1% FBS and measured on a FACSCalibur System (BD Biosciences).
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8

Characterization of hADSCs and iNSCs

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hADSCs were incubated with each antibody against human CD14, CD34, CD45, HLA-DR (FITC; BD), CD44, CD73, CD90, CD105, CD166 (PE; BD) and CCR2 (Alexa Fluor; Serotec) for 1 h at 4 °C. Corresponding mouse isotype antibodies were used as controls. The single color-stained cells were washed with PBS and fixed with 1% PFA in PBS. MSC immunotypes were determined by flow cytometry on a FACS Calibur System (BD) and the percentage of expressed cell surface antigens was calculated for 10,000 gated-cell events.
To quantify the percentage of iNSCs induced from hADSCs, iNSCs were incubated with NCAM-conjugated FITC, Nestin-conjugated PE (BD) and Ki67-conjugated FITC (eBioscience) for 1 h at 4 °C. Cells without antibody binding were used as controls. FACS experiment and data analysis were carried out according to manufacturer's instructions (FACS Calibur System, BD).
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9

ALDH Activity Assay in 3D Culture

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Cells were added into 6-well ultra-low attachment plates at 4×105 cells/well and treated with different concentrations of TF3 (0, 5, 10, and 20 μM) for 24 h. After incubation, ALDH assay was done using ALDEFLUOR kit according to the protocol instructions (Stem cell Technologies). The stained cells were analyzed by flow cytometry (FACSCalibur system, BD Biosciences).
For ALDH based sorting, ALDH assay was carried out. Then ALDH-positive (ALDH+) and –negative (ALDH) cells were sorted using flow cytometry (FACSCalibur system, BD Biosciences).
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10

Apoptosis and Cell Cycle Analysis

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Apoptosis was evaluated by flow cytometry. Briefly, cells were stained with Annexin V-FITC conjugate and propidium iodide solution. A FACSCalibur system (BD Biosciences, United States) was used to analyze apoptosis.
The cells were fixed in 75% ethanol and stained with PI/RNase Staining Buffer (BD Biosciences). The cell cycle was analyzed by flow cytometry using the FACSCalibur system (BD Biosciences, United States).
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