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Taqman microrna assay kit

Manufactured by Thermo Fisher Scientific
Sourced in United States, China, Germany, Japan, Switzerland, Lithuania

The TaqMan MicroRNA Assay Kit is a laboratory tool designed for the detection and quantification of microRNA (miRNA) molecules. The kit provides a standardized and efficient method for analyzing the expression levels of specific miRNAs in biological samples.

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444 protocols using taqman microrna assay kit

1

Quantifying miR-155 Expression

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Total RNA was extracted from the cells or tissues using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and cDNA was generated using the MultiScribe Reverse Transcriptase (Life Technologies, Carlsbad, CA, USA) following the manufacturer's protocols. Quantitative PCR was performed in triplicate using an AB7500 FAST Real-Time PCR System (Applied Biosystems, Foster City, CA, USA). TaqMan primers for mmu-mir-155 (human: assay ID 001806; mouse: assay ID 000479; TaqMan MicroRNA Assay Kit, Life Technologies) were used to monitor miR-155 expression. miR-155 expression was normalized to the reference gene U6 (assay ID 001973; TaqMan MicroRNA Assay Kit, Life Technologies) and relative expression was calculated using the 2−ΔΔCt method.
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2

Quantification of miR-143 Expression

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Total RNA was extracted from cell lines and clinical samples using the mirVana miRNA Isolation Kit (Ambion) according to the manufacture's protocol. MiR‐143‐specific complementary DNA was generated from 20 ng total RNA using the TaqMan MicroRNA RT kit (Applied Biosystems, Foster City, CA) and the miR‐143‐specific RT‐primer from the TaqMan Micro RNA Assay kit (Applied Biosystems). The expression levels of miR‐143 were measured using the miR‐143‐specific probe included with the TaqMan Micro RNA Assay kit on a Real‐Time PCR System 7300 with SDS software (Applied Biosystems).
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3

Quantification of miRNA and mRNA Levels

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Total RNA was extracted using TriPure Isolation Reagent (Sigma Aldrich, Saint-Louis, MO, USA). For the quantification of miRNA expression levels, 50 ng of total RNA was used for reverse transcription using the TaqMan MicroRNA Reverse Transcription Kit (Life Technologies), and real-time PCR was performed in triplicate using the TaqMan MicroRNA assay kit (hsa-miR-15a-5p: ID000389, RNA-control RNU44: ID001094, Life Technologies) according to the instructions of the manufacturer. Normalization was completed with small nucleolar RNU44, and the relative expression was calculated using the comparative cross threshold (Ct) method. For the quantification of mRNA levels, 1 µg of total RNA was subjected to reverse transcription using MMLV (Moloney Murine Leukemia Virus) reverse transcriptase enzyme (Invitrogen, Carlsbad, CA, USA). Quantitative PCR analysis was performed in triplicate using ABgene SYBR green-based kits (Thermo Fisher Scientific) using the oligonucleotides shown in Table 1 as described previously [38 (link),39 (link)]. The ribosomal protein RPLP0 served as normalization control.
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4

Quantitative Analysis of miRNAs and Genes

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Total RNA was extracted from cultured cells and fresh tissues using TRIzol reagent (Invitrogen). Total miRNAs were extracted using a mirVana miRNA Isolation Kit (Ambion) from paraffin-embedded OS specimens according to the manufacturer’s protocol. The levels of the miRNAs and the RNU6 endogenous control were measured using TaqMan primer sets and a TaqMan microRNA Assay Kit (Life Technologies). For the expression analysis of other genes, reverse transcription (RT) and PCR were performed with a High-Capacity cDNA Reverse Transcription kit and a QuantiTect SYBR Green PCR kit (QIAGEN), respectively. The primer sequences are listed in Table S2.
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5

Profiling miRNA Expression in MDA-MB-231 Cells

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MDA-MB-231 cells were seeded at a density of 1.2 × 105 cells per well of a 6-well cell culture plate and treated with small molecules (final concentration of 5 μM) for 2 days. Total RNA including miRNAs was isolated using the miRNeasy Mini Kit (Qiagen, Netherlands) according to the manufacturer’s instruction. The TaqMan MicroRNA Reverse Transcription Kit (Life Technologies, CA, USA) was used for cDNA synthesis. For qRT-PCR, cDNAs were amplified with the TaqMan MicroRNA assay kit (Life Technologies, CA, USA), and the level of miRNA was normalized to that of U6 snRNA.
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6

Quantification of microRNA Expression

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Expression of selected microRNAs and of the control RNU6B was assessed using a standard TaqMan MicroRNA assay kit (Life Technologies) according to the manufacturer's instructions and as previously described [28 (link), 29 (link)]. Briefly, microRNA was reverse transcribed to cDNA using gene-specific primers and the relative amount of each microRNA was computed using the equation 2−ΔCt, where ΔCt = (Ct microRNA – Ct RNUB6).
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7

Quantifying miR-146a Expression in Melanoma, Nevus, and Skin

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For analysis of miR-146a expression in human melanoma, nevocellular nevus and healthy skin samples, total RNA from FFPE tissue was isolated using the miRNeasy FFPE Kit (Qiagen) according to the manufacturer’s instructions. MultiScribe Reverse Transcriptase was used for reverse transcription and miR-146a expression was examined with the TaqMan MicroRNA Assay Kit (Life technologies) and a LightCycler 480 (Roche). TaqMan primers for hsa miR 146a (assay ID 000468) were used to monitor miRNA expression. Gene expression was normalized to the reference gene snoRNA202 (assay ID 001232) and data were analyzed using the Pfaffl method.
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8

Total RNA Extraction and qRT-PCR Analysis

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Total RNA from cultured cell were extracted with RNAiso plus (Takara, 9108) following the manufacture’s protocol. For miRNA expression assay, total RNA was reversely transcribed using Taqman MicroRNA Reverse Transcription Kit (Life Technologies, 4366597), then miRNA real-time PCR was performed using Taqman MicroRNA Assay Kit (Life Technologies). For mRNA expression assay, total RNA was reversely transcribed using M-MLV Reverse Transcription System (Takara) and SYBE Green PCR master mix (Toyobo, QPK-201) was purchased for mRNA real-time PCR. All quantitative real-time PCR were performed on an ABI 7300 Real Time System, RNU6 or GAPDH was used as internal control for miRNA and mRNA assay respectively. Relative gene expression was calculated by mean of relative quantification (2-ΔΔCt) as previously described [60 (link)]. The specific real-time PCR primers for each gene were listed in Table S2 (Additional file 5: Table S2).
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9

Investigating miR-124 Regulation of Akt Signaling

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Fetal bovine serum (FBS), puromycin, 4-(Methylnitrosoamino)-1-(3-pyridinyl)-1-butanone, and cell culture medium were purchased from Sigma (St. Louis, MO, USA). Antibodies against total Akt, Akt1, Akt2, DNMT1, phosphor-Akt (ser473), phosphor-mTOR (ser2448), phosphor-p70S6K (Thr 389), Ki-67, and actin were obtained from Cell Signaling Technology, Inc. (Danvers, MA, USA). Negative control agomiR and miR-124 agomiR were synthesized at Integrated DNA Technologies (Coralville, IA, USA). MK2206 was purchased from Selleckchem (Houston, TX, USA). Plasmid of constitutively active Akt and mutant K-ras (G12D) were kindly gifted from Dr. Cheng (Moffitt Cancer Center). The expression vector of miR-124 and miR-124-antisense were from GeneCopoeia (Rockville, MD, USA). Dual-Luciferase Assay Kit and TUNEL assay kit were purchased from Promega (Madison, WI, USA). SYBR Green PCR kit, Lipofectamine 2000, Taqman MicroRNA Assay kit, TRIzol, Opti MEM, High-Capacity cDNA Reverse Transcription kit, miRNA expression reporter vector, miR-124 mimics, miR-124 and RNU6 primer sets, and antisense of miR-124 were purchased from Life Technologies (Carlsbad, CA, USA). siRNA for target DNMT1 (#1, 5′-CGAGUCUGGUUUGAGAGUTT-3′; #2, 5′-GGAAUGGCAGAUGCCAACAGCTT-3′) was generated by RiboBio (Guangzhou, China).
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10

Quantitative Analysis of NEDD4L and miR-93

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Total RNA was extracted using TRIzol reagent (Life Technologies), and the first-strand complementary DNA (cDNA) was generated by the Reverse Transcription System (Promega) in a 20-μl reaction containing 1 μg of total RNA. A 0.5-μl aliquot of cDNA was amplified by Fast SYBR Green PCR Master Mix (Life Technologies) in each 20-μl reaction. PCR reactions were run on the ABI 7900 Fast Real-Time PCR system in the OSUCCC Nucleic Acid Core Facility with the following primers: NEDD4L, forward, 5′-AGA AAC TGC CCA GAG CTC AC-3′, reverse, 5′-TCG CCT CTG CAA AAG TCT GT-3′; GAPDH, forward, 5′-GAAGGTGAAGGTCGGAGT-3′, reverse, 5′-GAAGATGGTGATGGGATTTC-3′. For miRNA detection, the TaqMan MicroRNA Assay Kit (Life Technologies) and miR-93 detection kit (Assay ID: 001090) were used. All quantitative real-time PCR analyses were carried out according to the manufacturer’s instructions. The relative expression values of NEDD4L and miR-93 were calculated and normalized to GAPDH and RNU6B (Assay ID: 001093), respectively, in each sample and compared. The experiments were performed in triplicates.
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