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10 protocols using minimax 300 imaging cytometer

1

Opto-TLR4 Cell Adhesion and Proliferation

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For the adhesion assay, opto-TLR4 PANC-1 cells were transferred to non-adhering plates (30,000 cells/ well; S-Bio, Hudson, NH, USA; MS-9096UZ) and immediately treated with LPS, or light and different concentrations TAK-242 or PAR.
For continuous measurement, the “electrical cell-substrate impedance sensing” (ECIS) model 9600Z was used. Therefore, 9W20idf PET plates (ibidi, Gräfelfing, Germany; 72098), precoated with 40 µg/mL neutralised rat tail collagen type I (Thermo Fisher Scientific, Vienna, Austria; A1048301), were overlaid with the pre-treated cells, and cell attachment and spreading were assessed by continuous resistance measurements for 20 h. For endpoint measurement, cells were plated and allowed to attach on 96-well cell culture plates (pre-coated with collagen I) for 30 min (attachment assay), rinsed twice with 1xPBS and adhering cells were automatically counted using the Mini Max 300 Imaging Cytometer (Molecular Devices, LLC, San Jose, CA, USA; 5022671).
For the proliferation assay, cells (3000 cells/well) were treated with light or left untreated for 0–72 h and cells were automatically counted using the Mini Max 300 Imaging Cytometer (Molecular Devices, LLC, San Jose, CA, USA; 5022671) every 24 h.
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2

Quantifying Cellular ROS Production

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ROS production was detected by using the oxidation-sensitive fluorescent probe, CM-H2DFDA (Molecular Probe, Invitrogen). The cells were first pre-incubated with CM-H2DFDA (2 µM) in PBS for 30 min, followed by exposure to rotenone in complete cell culture medium for 2 h. The medium was then replaced with HBSS and fluorescence (Ex 485 nm/Em 520 nm) analysed by Spectramax i3x plate reader. To ensure a representative readout of the fluorescent adherent cells, 37 different points were read in each well using the well scan function of the plate reader. Equal cell number in each well were verified by staining the nuclei with DRAQ5 (nuclear staining, 1:500; Thermo Fisher) for 30 min at room temperature, and cell number were counted by the spectramax i3x plate reader equipped with a microscopic module (MiniMax300Imaging Cytometer, Molecular Devices). For flow cytometric analyses, the cells were treated (CM-H2DFDA pre-incubation and rotenone exposure) in eppendorph tubes for reasons as described in 2.5. When using the efflux-pump inhibitor probenicid (1 mM), it was used during the CM-H2DFDA staining and rotenone exposure.
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3

Cytotoxicity of DON in Glial Cells

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Cytotoxic effects of DON (0.8, 1.6, 3.1, 6.3, 12.5, and 25 µM) in astrocytes and microglia were analysed after 24 h exposure with CellToxTM Green Dye (1:2000). The dye was added to the cells as described by the manufacturer, and fluorescence signals (Em: 485 nm/Em: 520 nm) were quantified with a Spectramax i3x plate reader using the well scan function by reading 32 different points/well in all wells. The cytotoxicity data were normalised by the total cell numbers, which were determined by staining with the nuclear stain DRAQ5 (1:500, 30 min) and counting with the Spectramax i3x plate reader equipped with a microscopic module (MiniMax300imaging cytometer, Molecular Devices), Ex: 625 nm, Em: 713 nm.
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4

Gaussia Luciferase Reporter Assay

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Gaussia Luciferase Reporter (Gluc) was measured by applying the BioLux® Gaussia Luciferase Assay Kit (New England Biolabs, Frankfurt, Germany; E3300L) before (T0h) and 6-, 12-, 24-, or 48-h post (T6h-48) treatment or light exposure. Therefore, 20 µL of cell culture medium from each well was transferred to Corning® 96 well plates (clear bottom, white; Merck, Darmstadt, Germany; CLS3610-48EA) and combined with 50 µL of Gluc assay solution and incubated for 30 s in the dark. Relative Luminescence Units (RLU) were measured using the Spectra Maxi3x, Luminescence Glow (Lum 384; Molecular Devices, LLC, San Jose, CA, USA; 0200-7015POS) and normalized to the cell count generated with the Mini Max 300 Imaging Cytometer (Molecular Devices, LLC, San Jose, CA, USA; 5024062).
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5

Cell Viability Assay Protocol

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Following calcium flux measurements, calcium dye was removed, 40 μL maintenance medium was added, and cells were returned to 37 °C and 5% CO2 incubator. After 24 hr of initial inhibitor application, cells were treated with EarlyTox Cell Integrity Kit (Molecular Devices, USA) to assess cell viability. Medium and inhibitors were removed and cells were equilibrated with 25 µL of a 50:50 solution of maintenance medium-to-Dulbecco’s phosphate-buffered saline (DPBS) (+CaCl2 + MgCl2). Viability stain was prepared in a 1:1000 dye-to-DPBS (+CaCl2 + MgCl2) solution. Cells were then stained with 25 µL of dye solution and incubated for 30 min at 37 °C and 5% CO2. Well images were taken using a MiniMax 300 Imaging Cytometer (Molecular Devices) at 713 nm and 541 nm wavelengths for total and dead cells, respectively. Cells were counted using analysis the SoftMax Pro software. Cell viability was determined as the ratio of live cells compared to the total number of cells present in each well. The number of live cells was calculated by subtracting the number of dead cells from the total number of cells.
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6

Cell Viability Assay with AuNPs

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Human HCT-116 cells (colorectal carcinoma), human MCF-7 cells (breast cancer) and human A549 cell lines (non-small-cell lung carcinoma) were obtained from American Type Culture Collection (ATCC). HCT-116 and A549 cells were maintained in RPMI 1640 Medium (Gibco by Life Technologies) with 10% fetal bovine serum (FBS). MCF-7 cells were maintained in DMEM (Gibco by Life Technologies) with 10% FBS.
Cell viability treated with different samples was detected by MTT assays. Briefly, 3×103 HCT-116, MCF-7 and A549 cells were plated in 96-well plates. After 6 h, the medium was removed and the fresh culture medium containing designed concentrations of AuNPs, 356, 356-AuNPs and 356-TAT-AuNPs. After another 24 h, 25 µL of 5 mg/mL MTT solution was added to the 96-well plate, and the cells were cultured for another 4 h. 100 µL of DMSO was then added to dissolve the purple formazan crystals, and the OD value (492 nm) was detected with a microplate reader (MiniMax 300 Imaging Cytometer, Molecular Devices, USA).
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7

Antibacterial Activity Screening of CAGCs

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We synthesized nine different CAGCs as reported previously (Yadav et al., 2019 (link)). A single colony of Xoo (PXO99) was cultured in NB medium at 28°C with shaking at 180 rpm. The optical density (OD600) was measured, and the final OD was set as 0.1. Bacterial culture was then inoculated into a 96-well plate containing 100 μl of compounds that were diluted from higher concentrations (256, 128, 64, 32, 16, 4, 2, 1, and 0.5 μg). Media (200 μl) without bacterial culture and bacterial suspension (200 μl) without CAGC treatment were used as control. The plates were incubated at 28°C, and OD600 was measured at an interval of 6 h using a spectrophotometer (MiniMax 300 Imaging Cytometer, Molecular Devices, CA, USA). To determine the lowest antibacterial drug concentration to inhibit 99% bacterial growth, minimum inhibitory concentrations (MIC99) from four biological replicates for each concentrations were measured.
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8

Cell Count at Varying Temperatures

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The cells were seeded in a 96 well plate, 50,000 cells/cm2, and cultured for 1–14 days at different temperatures (20, 16, 10, 4 °C). For quantification, the cells were stained with DRAQ5 (Thermo Fisher; nuclear staining, 1:500) for 30 min at room temperature and the cell number in a specific area of the well was counted by the spectramax i3x plate reader equipped with a microscopic module (MiniMax300Imaging Cytometer, Molecular Devices, San Jose, CA, USA).
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9

Assessing DNA Damage in Irradiated Cells

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Cells were plated in 96-well dishes and pre-treated with vehicle or R428
(1uM). A novel high-throughput irradiator utilizing a 50 kVp x-ray beam spectrum
was used to deliver 4 gray (Gy) as previously described (33 (link), 34 (link)). Cells were
fixed in 4% paraformaldehyde 4 hours later, permeabilized in 90% methanol,
blocked, and incubated with γ-H2AX primary antibody (1:500) overnight.
Cells were washed and incubated with FITC conjugated secondary antibody (1:1000)
(Santa Cruz Biotechnology). γ-H2AX fluorescence per cell was evaluated
via a SpectraMax i3 plate reader with MiniMax 300 imaging cytometer using
SoftMax Pro v6.4 software (Molecular Devices, Sunnyvale, CA, USA). All
γ-H2AX fluorescent values were averaged and then normalized to averaged
values from vehicle treated cells.
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10

Quantifying Lysosomal Activity in Macrophages

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LysoSensor experiments: Macrophages were seeded in a 96-well Costar, black, clear-bottom plate at a cell density of 100,000/well, and cells were treated for 24 h with CFTR modulators. Bafilomycin-A1 (Baf-A1; Enzo Life Sciences, Farmingdale, NY, USA; BML-CM110-0100) and rapamycin (Sigma Aldrich, St. Louis, MO, USA; R0395) were administered at 100 nM and 5 µg/ml concentration for 2 and 1 h, respectively. LysoSensor Green DND-189 (L7535, Molecular Probes) was incubated with macrophages in imaging solution (10 mM of HEPES, 1 mg/ml of bovine serum albumin (BSA), 1 mg/ml of glucose, 1 mM of MgCl2, and 1.8 mM of CaCl2 in PBS) for 10 min at a concentration of 1 µM. Macrophages were then washed 2× with PBS and incubated in imaging solution for 15–30 min. LysoSensor fluorescence was measured using SpectraMaxi3x micro-plate reader (Molecular Devices, San Jose, CA, USA) at 443/505 and then normalized to cell number counted using a SpectraMax MiniMax 300 Imaging Cytometer.
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