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6 protocols using 7890a instrument

1

Fatty Acid Composition Analysis by GC/MS

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Fatty acid composition was analysed by gas chromatography-mass spectrometry (GC/MS) using an Agilent 5975 series MSD and an Agilent 7890 A instrument equipped with an HP-5 column (30 m × 0.25 mm, film thickness 0.25 m; HP). The program used for GC/MS analysis was as follows: 140 °C for 2 min, heating to 180 °C at a rate of 5 °C/min holding at 180 °C for 5 min, heating to 230 °C at 5 °C/min, holding at 230 °C for 6 min with electron ionisation of 70 eV (Guo et al. 2019 (link)). Fatty acid composition of microbial lipids produced under different nutritional conditions were statistically analysed by t-tests and p ≤ 0.05 was considered to indicate statistical significance.
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2

Volatile Organic Compounds in Raw Milk

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VOCs were identified and quantified using HS-SPME/GC-MS. Raw milk (10 mL) and 20 μL internal standard (100 mg/kg) were placed in vials. The samples were equilibrated for 30 min in a 40 °C-water bath and stirred constantly. Fiber (1 cm) coated with divinylbenzene/carboxen/poly-dimethylsiloxane (50/30 μm) was used in the extraction. Then, the adsorption time was 30 min after inserting the SPME extraction fiber into the headspace vial. Subsequently, the sampler was removed from the headspace vial and inserted into the GC injector. The aroma compounds adsorbed on the SPME fiber were desorbed by heating (250 °C), and the desorption time was 5 min. GC-MS was performed using an Agilent 7890A instrument coupled to an Agilent 5975C mass selective detector and a DB-WAX UI column (30 m × 0.25 mm × 0.25 μm). The initial temperature was 30 °C, which was kept for 6 min, increased to 220 °C at 5 °C/min, and kept at 220 °C for 3 min. The entire process was carried out in full scan mode. For accuracy, three replicate analyses were conducted for each sample.
Retention index (RI) values for each VOC were calculated from GC-MS results for n-alkanes under similar conditions. The NIST 08 library was used to identify unknown compounds. Quantification was achieved using internal standards.
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3

Comprehensive Analytical Techniques for Chemical Analysis

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Optical rotations were measured on a JASCO P2000 automatic digital polarimeter. UV spectra were recorded on a JASCO V-650 spectrophotometer. IR spectra were recorded on a Nicolet 5700 spectrometer using an FT-IR microscope transmission method. NMR spectra were acquired with Bruker AVIIIHD 600, VNS-600, or Mercury-400 spectrometers in DMSO-d6. HRESIMS spectra were collected on an Agilent 1100 series LC/MSD ion trap mass spectrometer. MPLC system was composed of two C-605 pumps (Büchi), a C-635 UV detector (Büchi), a C-660 fraction collector (Büchi), and an ODS column (450 mm×60 mm, 50 μm, 400 g; YMC). Semi-preparative HPLC was conducted using a Shimadzu LC-6AD instrument with an SPD-20A detector and a Daicel Chiralpak AD-H column (250 mm×10 mm, 5 μm). Preparative HPLC was also performed on a Shimadzu LC-6AD instrument with a YMC-Pack ODS-A column (250 mm×20 mm, 5 μm). Column chromatography (CC) was performed with silica gel (200–300 mesh, Qingdao Haiyang Chemical Inc., Qingdao, China), SF-PRP 512 A (100–200 mesh, Beijing Sunflower and Technology Development Co., Beijing, China), ODS (50 μm, YMC, Japan), and Sephadex LH-20 (GE, Sweden). TLC was carried out on glass precoated silica gel GF254 plates. Spots were visualized under UV light or by spraying with 10% sulfuric acid in EtOH followed by heating. GC analyses were obtained using an Agilent Technologies 7890A instrument.
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4

Quantification of Serum, Hepatic, and Fecal Lipids

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Serum levels of total cholesterol and triglyceride were analyzed using the Cholesterol E-test Wako kit and Triglyceride E-test Wako kit, respectively (Wako Pure Chemical Industries, Ltd.).
Hepatic lipids were extracted with chloroform/methanol (2:1, v/v) according to the method of (Folch et al. 1957) . Extracted lipids were saponified in ethanolic KOH and nonsaponifiable lipids were extracted from the alkaline mixture with chloroform/methanol (2:1, v/v). Fecal steroids were extracted with hot ethanol. Quantification of hepatic cholesterol and fecal neutral D r a f t steroids was performed by gas chromatography (7890A instrument; Agilent Technologies, Santa Clara, CA, USA) using a HP-5 column (Agilent Technologies). 5α-Cholestane (Sigma-Aldrich) was used as an internal control. Fecal bile acids were analyzed using the Total Bile Acids Test Wako kit (Wako Pure Chemical Industries, Ltd.).
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5

Fatty Acid Profile Analysis by GC-MS

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The analysis of FAMEs was carried out using a gas chromatograph (Agilent Technologies, instrument 7890A) connected to a mass selective detector (Agilent Technologies MSD 5975C, inert XL EI/CI) (GLC-MS), using helium as a carrier gas. The chromatograph was equipped with an HP-5MS column (30 m × 0.25 mm). The temperature program was as follows: 150 °C for 5 min. raised to 310 °C (5 °C min−1), and the final temperature was maintained for 10 min.
FAMEs were identified by an analysis of their mass spectra and fragmentation patterns. Each fatty acid was quantified by calculating its peak area relative to the total peak area. The positions of the branching methyl group and the double bonds were determined by an analysis of mass spectra of fatty acid pyrrolidides [26 (link)]. The cis and trans isomers of 16:1 and 18:1 FAs were identified based on their retention times.
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6

GLC-MS Analysis of Fatty Acids and Monosaccharides

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The methyl esters of fatty acids and the alditol acetates of monosaccharides were analyzed by GLC-MS using a gas chromatograph (Agilent Technologies, instrument 7890A, Santa Clara, CA, USA) connected to an MSD 5975C (inert XL EI/Cl) detector. The chromatograph was equipped with an HP-5ms (SLB-5ms) capillary column (30 m × 0.25 mm; Sigma-Aldrich, St. Louis, MO, USA). A temperature gradient of 150 °C (5 min) to 310 °C, at 5 °C/min, was applied, and the final temperature was kept for 10 min.
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