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15 protocols using anti ldha

1

Protein Extraction and Western Blot Analysis

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To extract total protein, tissue samples and cells were lysed using ice-cold radioimmunoprecipitation (RIPA) lysis buffer supplemented with protease inhibitors (Solarbio, Beijing, China). The protein concentrations were determined using a protein quantitation kit (Thermo Fisher Scientific, Rockford, IL, USA). NE-PER Nuclear and Cytoplasmic Extraction Reagents (Thermo Scientific) were used for nuclear protein extraction according to the manufacturer’s protocol. Total protein or nuclear protein was then subjected to 10% or 15% SDS-PAGE and transferred onto nitrocellulose membranes (Millipore, Bredford, MA, USA). After the non-specific binding was blocked with 5% nonfat dried milk in TBST for 1 h, the membranes were incubated with primary antibodies at 4°C overnight. The following primary antibodies were used: anti-FAM84B, anti-c-Myc, and anti-LDHA were from Abcam (Cambridge, MA, USA), and anti-Survivin, anti-GAPDH, anti-β-catenin, and anti-H3 were obtained from Cell Signaling Technology (Danvers, MA, USA). After washing with TBST and incubation with corresponding HRP-conjugated secondary antibodies (Beyotime, Shanghai, China), the immunoreaction was detected with enhanced chemiluminescence (Millipore).
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2

Quantification of Apoptosis-Related Proteins in Mouse Tumors

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Samples of mouse tumor tissue were ground at low temperature, and the tissue seriflux and cells in each group were added to RIPA lysate buffer. After incubation for 40 min on ice, the solution was centrifuged (13400 g for 15 min), and the supernatant was collected. The extracted proteins were quantified using the BCA method (Beyotime, China). Next, a 40 μg aliquot of total protein from each sample was separated by 10% SDS-PAGE, and the protein bands were transferred onto PVDF membranes (Roche, Basel, Switzerland). After blocking, the membranes were incubated with primary antibodies (1: 1000) against the target proteins overnight at 4°C and then subsequently incubated with a secondary antibody (1: 2000) for 2 h. The immunostained protein bands were detected by treatment with ECL solution (Thermo Fisher Scientific, Waltham, MA, USA). The primary antibodies used (anti-caspase 3, anti-HK2, anti-PKM2, and anti-LDHA) and secondary antibody (anti-GAPDH) were purchased from Abcam (Cambridge, MA, USA).
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3

Protein Expression Analysis by Western Blotting

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Western blotting was performed on cultured cells or tissue samples after the indicated treatments. Cell lysates were collected using a sodium dodecyl sulfate lysis buffer (Beyotime Biotechnology, Shanghai, China). Equal amounts of total protein (approximately 15 μg for cell samples and 60 μg for tissue samples) were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto nitrocellulose membranes (Millipore, Billerica, MA, USA). Membranes were blocked using 5% nonfat powdered milk (Sangon, Shanghai, China) in TBS with Tween-20 (TBST) at about 20°C for 1.5 h, incubated with primary antibodies overnight at 4°C, washed three times with TBST, and then incubated with secondary antibodies for 1 h. The signal intensity of protein bands was visualized using an Enhanced Chemiluminescence Detection Kit (Tanon, Shanghai, China). A semi-quantitative evaluation of protein density was performed using ImageJ (Version 1.5.3). The following antibodies were used at a 1:1000 dilution: anti-GGH (Cat. #138495; Abcam, Cambridge, UK), anti-PKM (Cat. #150377; Abcam), anti-GLUT1 (Cat. #115730; Abcam), anti-LDHA (Cat. #52488; Abcam), anti-β-actin (Cat. #4970, Abcam), and anti-GAPDH (Cat. #2118; Cell Signaling, Danvers, MA, USA).
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4

Immunohistochemical Analysis of Tumor Tissues

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Tumor tissues were collected, fixed in 4% paraformaldehyde, and embedded in paraffin after the mice were euthanized. The slides were sectioned and stained with H&E; tumor tissues were also used for IHC, and Ki-67 was used for histological evaluation. Ki-67 signal was stained by diaminobenzidine (DAB; brown), and cell nucleus was counterstained by hematoxylin (blue) (Figure 5D). The primary antibodies, anti-HK2 (1:100; Abcam), anti-GLUT1 (1:100; Abcam), anti-LDHA (1:100; Abcam), anti-HIF-1α (1:100; Abcam), anti-Ki-67 (1:200; Abcam), anti-Bax (1:100; Proteintech), anti-Bcl2 (1:100; Proteintech), and anti-Caspase-3 (1:100; Proteintech) were applied to the tissue sections and allowed to incubate overnight at 4°C. Then, samples were further processed as per manufacturer’s instructions and a series of procedures.15 (link)
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5

Immunohistochemical Profiling of IVD Pathogenesis

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Immunohistochemistry was performed using SP-9000 Histostain-Plus kits (ZSGB-BIO, Beijing, China) according to a previous study.63 (link) Briefly, decalcified IVD tissues were deparaffinized with xylene, and endogenous peroxidase activity was quenched with 3% H2O2. Antigen retrieval was performed with 0.1% trypsin, and normal goat serum was used for blocking for 30 min. Sections were incubated overnight with anti-Hif1α (1:200 dilution; Abcam, MA, USA), anti-Hif2α (1:200 dilution; Abcam, MA, USA), anti-VHL (1:200 dilution; Abcam, MA, USA), type X collagen (COLX) (1:400 dilution; Abcam, MA, USA), anti-osteocalcin (1:100 dilution; Santa Cruz Biotechnology), anti-RUNX2 (1:100 dilution; Santa Cruz Biotechnology), anti-VEGF (1:200 dilution; Abcam, MA, USA), anti-GLUT1 (1:200 dilution; Millipore, Billerica, MA, USA), anti-LDHA (1:200 dilution; Abcam, MA, USA), and anti-PDK1 (1:200 dilution; Abcam, MA, USA). After rinsing with PBS, a horseradish peroxidase (HRP)-conjugated secondary antibody was applied and stained with a DAB kit.
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6

Nanoparticle-based Immune Modulation Protocol

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DSPE-PEG2000 was provided by AVT Technology Co. (Shanghai, China). Dipalmitoyl choline phosphate (DPCP) was provided by the Changchun Institute of Applied Chemistry (Changchun, China). The water-quenching NIR fluorescent probes, P2 and P4, were kindly provided by Professor Wu Wei from the School of Pharmacy, Fudan University, Key Laboratory of Smart Drug Delivery of MOE and PLA (Shanghai, China). Murine IL-4 was from Thermo Fisher Scientific (Waltham, MA, USA). Lipopolysaccharide (LPS) was from Sigma-Aldrich Co. Anti-STAT3, anti-HIF-1α, anti-c-Myc, anti-LDHA, and anti-GLUT1 antibodies were purchased from Abcam Trading Co., Ltd. (Shanghai, China). Other antibodies used in the flow cytometry assay and immunofluorescence assay were from BioLegend (San Diego, CA, USA). All other solvents were obtained from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China). All cells were purchased from Shanghai Institutes for Biological Sciences (Shanghai, China).
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7

Western Blot Analysis of LDH-A

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For Western blotting, the cells were lysed on ice in modified Radioimmunoprecipitation assay (RIPA) buffer (50 mmol/L TrisHCl (pH 7.4), 50 mmol/L sodium fluoride, 150 mmol/L NaCl, 1% Nonident P40, 0.5 mol/L EDTA (pH 8.0)) supplemented with Complete Proteinase Inhibitor Cocktail (Roche, Mannheim, Germany). Supernatants of the samples were collected after centrifugation at 14,000× g and protein concentration was determined using a Bicinchoninic Acid Protein Assay Kit (ThermoFisher, Rockfold, IL, USA). Protein (20 μg of each sample) was electrophoresed on 4–12% Bis-Tris Gel (Life Technologies, Carlsbad, CA, USA) and transferred to the membrane. The membranes were blocked with 5% non-fat milk in 1× Tris-Buffered Saline (TBS) (Boston BioProducts, Ashland, MA, USA) for 1 h and probed with primary antibodies overnight. Membranes were washed with TBS and visualized using Super Signal West Pico chemiluminescent substrate (ThermoFisher). The following antibodies were used: anti-LDH-A (Abcam, Eugene, OR, USA) and anti-β-actin (Sigma Aldrich, Burlington, MA, USA).
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8

Protein Extraction and Quantification

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Tissue or cell protein was extracted using the Total Protein Extraction Kit (ProMab Biotechnologies, Richmond, USA, Cat. No: SJ-200,501) or a RIPA lysis buffer, and then centrifuged at 9000 rpm at 4 °C for 10 min. Nucleoprotein was extracted on ice via the NucBuster TM Protein Exaction Kit (Merck Millipore, USA, Cat. No: 71,183-3) and then centrifuged at 16,000 g at 4 °C for 5 min. Protein concentration was determined by BCA protein assay kit (Auragene, Changsha, China). The primary antibodies used were as follows: anti-PFK1 (santa, Cat: sc-377,346); anti-MCM10 (ptgcn, Cat:12,251-1-AP); anti-MCM6 (ptgcn, Cat:13,347-2-AP); anti-LDHA (ptgcn, Cat:21,799-1-AP); anti-GLUT1 (ptgcn, Cat:21,829-1-AP); anti-γ-H2AX (Abcam, Cat: ab26350); and anti-β-actin (ptgcn, Cat:66,009-1-Ig).
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9

Western Blot Analysis of Stem Cell Markers

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Harvested cells were lysed by RIPA buffer. After sonication, samples were centrifuged at 12 000 g for 15 min at 4°C. Total protein concentration was determined by applying DC Protein Assay Kit I (Bio‐Rad, USA). Proteins were transferred to Hybond nitrocellulose membranes (USA) after separation on 12% SDS‐PAGE. 5% skim milk was added to seal the membrane in Tris‐buffered saline (pH 7.5) at room temperature. The membrane was incubated with the primary antibody overnight at 4°C, followed by 4‐h incubation with the secondary antibody at room temperature. Protein bands were developed by ECL kit (Millipore, USA). Protein levels were assessed by ImageJ (USA). Primary antibodies including anti‐CD133, anti‐CD44, anti‐Oct‐4, anti‐HK2, anti‐PKM2, anti‐LDHA, anti‐β‐actin, and secondary antibody anti‐IgG were purchased from Abcam (UK).16
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10

Protein Extraction and Western Blot Analysis

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Total protein was extracted and lysed in RIPA reagent (Solarbio) with 1% PMSF (Solarbio). Specifically, the nuclear protein was extracted using the Nuclear Protein Extraction Kit (Solarbio). Then, the lysates were separated on 10% or 15% sodium dodecyl sulfate-polyacrylamide gels (SDS-PAGE) following transfer to a polyvinylidene fluoride membrane (PVDF; Millipore). After blocking with 5% skimmed milk, these membranes were incubated with the following primary antibodies: anti-RUNX2 (Cell Signaling Technology), anti-ALP (Proteintech Group, Inc.), anti-LDHA (Abcam), anti-β actin (Abcam), anti-Histone 3 (Abcam), and anti-lactyl-lysine (PTM Bio) overnight at 4 °C. Following washing with Tris-buffered saline containing 0.05% Tween 20, the second antibody was added and incubated for 1 h. The visualization was performed with the ECL chromogenic substrate (Millipore).
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