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18 protocols using exo fect exosome transfection reagent

1

Plasmid Transfection Using Lipofectamine 2000

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Plasmid transfections were performed using Lipofectamine 2000 (Life Technologies, catalog 11668027, Grand Island, NY, USA) according to the manufacturer’s instructions. Briefly, cells were transfected with a plasmid (500ng) mixed with 2μl of Lipofectamine 2000 diluted in 100μl of opti-MEM (Life Technologies, catalog #31985062, Grand Island, NY, USA). The resulting plasmid-lipid complexes were added to the cells, incubated for 6 h, and the medium changed into fresh DMEM. Next, the medium was changed to 10% FBS-containing medium for 20 h incubation. The transfected cells were then ready for use in experiments. pNICE-NL2A was a gift from Peter Scheiffele (Addgene plasmid # 15259, Watertown, Massachusetts, USA) (Chih et al., 2006 (link)). The pCAGGs-IRES-eGFP plasmid has been previously described and validated (Arikkath et al., 2008 (link)). EVs were transfected with miRNA using Exo-Fect™ Exosome Transfection Reagent (SBI, System Biosciences, Palo Alto, CA, USA) according to the manufacturer’s instructions.
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2

Transient miR Overexpression and Downregulation

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For transient over-expression/downregulation of miRs, cells at 50% confluence were transfected using Oligofectamine (Invitrogen, Milan, Italy) and 100nM of pre-miR-21, pre-miR-143-3p, pre-miR-378e, or scrambled pre-miR; or 200nM of anti-miR-21, anti-miR-143-3p, anti-miR-378e, or scrambled anti-miR (Ambion®, Life Technologies). For miR over-expression, exosomes isolated with ExoQuick-TC™ solution were transfected using Exo-Fect™ Exosome Transfection Reagent (SBI, System Biosciences) and 130nM of pre-miR-21, pre-miR-143-3p, pre-miR-378e, or scrambled pre-miR.
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3

Inhibition of miR-125a-5p and miR-16-5p in ADEVs

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Knockdown of miR-125a-5p and miR-16-5p in ADEVs was accomplished using Exo-Fect Exosome Transfection Reagent (Systems Biosciences). Antisense oligonucleotide inhibitors for miR-125a-5p and miR-16-5p (20 pmole; Qiagen) were mixed with Exo-Fect transfection reagent in 150 μl of siRNA buffer with 1 × 107 ADEVs and incubated for 10 min at 37 °C. Transfected exosomes were precipitated and resuspended in 300 μl 1× PBS.
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4

Transfection of extracellular vesicles with miRNA

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Extracellular vesicles were transfected with miRNA using ExoFect Exosome Transfection Reagent (SBI; System Biosciences, Palo Alto, CA, United States) according to the manufacturer’s instructions. Mouse miR-124 oligonucleotides used in this study were synthesized at IDT (Iowa City, IA, United States). Sequences of mouse miR-124 oligonucleotides used in this study were: Cy5-miR-124 – 5′cy5-uaaggcacgcggugaaugcc-cy5-3′; Cy5-scrambled RNA -5′cy5-gaucgaaccuagacuaguggu-cy5-3′, that does not recognize any sequences in mouse transcriptomes. EVs were dissolved in sterile PBS for exposure to microglia or intranasal administration in mice.
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5

Exosomal miRNA Uptake in HUVECs

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To assess the uptake of SCLC-cell-secreted exosomal miRNA in human umbilical vein vascular endothelial cells (HUVECs), Cy3-labeled miR-375-3p mimics were transfected into H446 cells, and the old culture medium (CM) was refreshed with CM containing exosome-depleted FBS for cell culture after 8 hours of transfection. Forty-eight hours later, exosomes in CM were collected by ultracentrifugation, followed by processing for PKH67 (Sigma) labeling. After washing with PBS once to remove excess dye, PKH67-labeled exosomes were harvested by ultracentrifugation and added to the CM of HUVECs. After incubation with PKH67-labeled exosomes for 12 hours, HUVECs were washed with PBS twice to remove excess exosomes followed by cell fixation using 4% paraformaldehyde solution. Cell nucleus of HUVECs were stained by DAPI and the uptake of exosomes in HUVECs was observed under a fluorescence microscope. All steps were conducted in the dark to avoid fluorescence quenching.
To transfer the mimics or inhibitors of miR-375-3p directly into isolated exosomes, Exo-Fect Exosome Transfection Reagent (System Biosciences, cat. NO. EXFT20A-1) was applied following the instructions.
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6

Plasmid Transfection and EV miRNA Uptake

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Plasmid transfections were performed using Lipofectamine 2000 (Life Technologies, catalog 11,668,027, Grand Island, NY, USA) according to the manufacturer’s instructions. Briefly, cells were transfected with a plasmid (500 ng) mixed with 2 μl of Lipofectamine 2000 diluted in 100 μl of opti-MEM (Life Technologies, catalog #31985062, Grand Island, NY, USA). The resulting plasmid-lipid complexes were added to the cells, incubated for 6 h, and the medium changed into fresh DMEM. Next, the medium was changed to 10% FBS-containing medium for 20 h incubation. The transfected cells were then ready for use in experiments. pNICE-NL2A was a gift from Peter Scheiffele (Addgene plasmid # 15259, Watertown, Massachusetts, USA) (Chih et al. 2006 (link)). The pCAGGs-IRES-eGFP plasmid has been previously described and validated (Arikkath et al. 2008 (link)). EVs were transfected with miRNA using Exo-Fect™ Exosome Transfection Reagent (SBI, System Biosciences, Palo Alto, CA, USA) according to the manufacturer’s instructions.
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7

Klotho-loaded Extracellular Vesicle Engineering

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For the engineering of EVs, Klotho recombinant protein was loaded onto EVs using the Exo-Fect Exosome Transfection Reagent (System Biosciences), according to the manufacturer’s protocol. In brief, 5 μg of EVs (quantified by Bradford) was incubated (by mixing) with 2.5 μg of recombinant Klotho in the presence of Exo-Fect solution for 1 h at +4°C. For the blockage of loading reaction, 30 μL of ExoQuick-TC was added to the mixture and kept for 30 min on ice. A pellet of Klotho-loaded EVs was obtained by a further 10 min of centrifugation at 13,000 rpm.
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8

Isolation and Characterization of EVs from A172 Cells

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EVs were isolated from the supernatant of A172 cells by differential centrifugation as previously described (Hu et al., 2012b (link); Hu et al., 2013 (link)). Briefly, conditioned media from control, Tat101 or exosome release inhibitor (DMA and MβCD) exposed A172 cells were harvested, centrifuged at 1,000 g for 10 min to eliminate cells, and again spun at 10,000 g for 30 min, followed by filtration through 0.22 µm filter to remove cell debris. EVs were pelleted by ultracentrifugation (Beckman Ti70 rotor, Brea, CA, USA) at 100,000g for 70 min. EVs were assessed for their protein content using BCA Protein Assay Kit (Pierce, Rockford, IL, USA). TSG101, Alix and CD63 were detected by western blot as exosome markers. EVs were further quantified by the Nanoparticle Tracking Analysis (NTA) Nanosight (model NS300, Malvern Instruments Ltd, United Kingdom). EVs isolated from A172 cell culture were also used to load miR-9 using Exo-Fect exosome transfection reagent (System Biosciences, Palo Alto, CA) according to the manufacturer's instructions.
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9

Rejuvenative Klotho-Enriched Extracellular Vesicles

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Aged EVs and Klotho+/− EVs were transfected with the synthetic Klotho mRNA oligonucleotides (Trilink Biotechnologies) using Exo-Fect Exosome Transfection Reagent from System Biosciences (Cat#EXFT-10A1). The loaded EVs were administered to aged MPCs for 48 hours. Refer to supplemental file for details.
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10

Exosome-Mediated miRNA Transfection in Adipocytes and U2OS Cells

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Exosomes derived from samples taken at time points DS1 and NS5, matched for time of day (Figure 1), were transfected with specific miRNA (scrambled control, agomir, or antagomir; Life Technologies, Carlsbad, CA, USA) using the Exo-Fect Exosome Transfection Reagent as described by the manufacturer’s protocol (# EXFT20A-1; System Biosciences, Mountain View, CA, USA) as previously reported [25 (link)]. Briefly, 50 μL of purified exosomes (100 μg) were used in each reaction, and the following reagents were added: 10 μL Exo-Fect solution, 20 μL of either 20 pmol agomir miRNA or antagomir miRNA, and 70 μL sterile 1× PBS. The mixtures were incubated at 37 °C in a shaker for 10 min and then immediately placed on ice, and 300 μL of ExoQuick-TC was added to stop the reactions. The samples were then centrifuged at 13,000 rpm for 3 min. The transfected exosome pellet was re-suspended in 300 μL 1 × PBS, and 75 μL of the agomir or antagomir was added to approximately 5 × 105 cells per well in 6-well culture plates, grown in exosome-depleted FBS medium. The transfected exosomes were applied into both human differentiated adipocytes and human Bmal1-dLuc U2OS osteosarcoma cells for 24 h.
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